PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G07470.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 321aa    MW: 33866.1 Da    PI: 8.7234
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G07470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-19123172255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+++tae+Aa a++ a+ +l+g
  ONIVA10G07470.1 123 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTYDTAEDAALAYDGAAFRLRG 172
                      59******9.**********955...5*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.83E-29122182No hitNo description
PROSITE profilePS5103223.143123180IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-22123181IPR016177DNA-binding domain
SMARTSM003807.3E-36123186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-32123181IPR001471AP2/ERF domain
PfamPF008474.4E-13124172IPR001471AP2/ERF domain
PRINTSPR003671.2E-10124135IPR001471AP2/ERF domain
PRINTSPR003671.2E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDRQWRCLAA AASTSGNSKL PPLPMALGGA VEYGQLVHGA AAPVAPFFVD AEQQSLSPAT  60
AMVLGAGWYN YNLVTPSQAA QLHHRLRRAV GAAPCSMKRC GGMAAAAAGR LALVGPTPVQ  120
AKLYRGVRQR HWGKWVAEIR LPRNRTRLWL GTYDTAEDAA LAYDGAAFRL RGDAARLNFP  180
ELRRGGRHHA PPLSASVDAK ILQATTTTTA DTAAAAAPAS TNTTPPPSPR VVKTEPGCCS  240
VSEASTTTTA DAADVSSTGS SPSPTSSNQA ATATPPPPRP PPPLPETIQQ LDFTEAPWDE  300
ADGFALRRYP SWEIDWDAIL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20120180263ATERF1
3gcc_A3e-20120180263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613762.10.0ethylene-responsive transcription factor RAP2-13
TrEMBLA0A0E0IRC70.0A0A0E0IRC7_ORYNI; Uncharacterized protein
STRINGONIVA10G07470.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.18e-31ERF family protein