PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G05260.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 471aa    MW: 51140.4 Da    PI: 4.8201
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G05260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP82.73e-26193258171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      r+++sL+llt+kf++lle +e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn irwkg
  ONIVA10G05260.1 193 RYDSSLGLLTKKFINLLEGAEDGTLDLNKAAETL---EV--QKRRIYDITNVLEGVDLIEKTLKNMIRWKG 258
                      6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012179.6E-10824No hitNo description
PRINTSPR012179.6E-103345No hitNo description
PRINTSPR012179.6E-105475No hitNo description
PRINTSPR012179.6E-108096No hitNo description
Gene3DG3DSA:1.10.10.105.7E-28190259IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-16193256IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.7E-34193258IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.2E-23195258IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.20E-35269382No hitNo description
SuperFamilySSF1440743.14E-25270381No hitNo description
PfamPF164212.7E-24274379IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MDGSAAIPPR PAPTPPAPAP APPQVFLRRS VLPPPPAPHH APPPPGAHVH YFRAASPIPI  60
FRAAASSRPP RPPPPSTTTA PPPPAAPAVT PARPPPQQPA VAVAAPPPAT TTATATEEVA  120
APATGNPMAN AADNEEKNER ETVQSEVAKG ETVQGPDKEC TTGAVKGIKR PRKPKGFKKG  180
DAGPSLFSPN NCRYDSSLGL LTKKFINLLE GAEDGTLDLN KAAETLEVQK RRIYDITNVL  240
EGVDLIEKTL KNMIRWKGFD MSKPKERERQ ISALKEEIES LYDEESRLDD EIMEAQEKLN  300
ALRVDEDRRK LLYVSKEDIN AIPRFQGSTL IAVNAPRGTY IEVPDPNLDM DIYKDLDNQE  360
KHYQIVFRSA MGPVDCFLIS NHQETFNADQ QMADNLDAAV TSGSSQAPQQ MDYVQASEIG  420
ESNGVREHTS EPSKRDDPVP GIVKIVPSDD IAADYWLSSD ADVSMTDTWG T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A7e-20193258773PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8549940.0CR854994.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0127D24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633977.10.0transcription factor E2FC
TrEMBLA0A0E0IQK10.0A0A0E0IQK1_ORYNI; Uncharacterized protein
STRINGONIVA10G05260.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.38e-81E2F transcription factor 1