PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA10G03230.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 345aa MW: 36782.7 Da PI: 5.8811

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA10G03230.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	44	63	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C Cgk+F+++ + H ONIVA10G03230.1 44 FACRVCGKRFPSQQAMAGHE 63 78***********9988885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.058	44	77	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MSPMRPRSSS ASSTSPVAGK KEKTATKPAG GGARDPPKGR SSSFACRVCG KRFPSQQAMA 60 GHEDHCRRHE DHVREAAAAT AAAVVVVATA AASGGCSNRA TCGALLASYT CATQLLAAAA 120 VADWSQVAAG ILLSKEQLVV AVAVAIVVAD DGQGQAAEVF LLDLAAEELN LGPSMNNEAT 180 SIPKALPALS GQFIIDGATG LTDDLGRVEA KGLAYVEGLE EVEELSKWYI AQTHVRLVTI 240 EDPDIPEIAD VDTLYPMQSA PVTHLMGDIA EELYSDTTSL WEKLRDNIAR SLEEMMSALD 300 RMRQKCKRIM RGHSTGMHQK STVPQDTGLR TPYRNNRLDT TVYLF

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MSPMRPRSSS ASSTSPVAGK KEKTATKPAG GGARDPPKGR SSSFACRVCG KRFPSQQAMA  60
GHEDHCRRHE DHVREAAAAT AAAVVVVATA AASGGCSNRA TCGALLASYT CATQLLAAAA  120
VADWSQVAAG ILLSKEQLVV AVAVAIVVAD DGQGQAAEVF LLDLAAEELN LGPSMNNEAT  180
SIPKALPALS GQFIIDGATG LTDDLGRVEA KGLAYVEGLE EVEELSKWYI AQTHVRLVTI  240
EDPDIPEIAD VDTLYPMQSA PVTHLMGDIA EELYSDTTSL WEKLRDNIAR SLEEMMSALD  300
RMRQKCKRIM RGHSTGMHQK STVPQDTGLR TPYRNNRLDT TVYLF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC097447	0.0	AC097447.4 Oryza sativa Japonica Group chromosome 10 clone OSJNBb0042K08, complete sequence.
GenBank	AC174464	0.0	AC174464.1 Oryza sativa (japonica cultivar-group) chromosome 10 BAC clone OSJNBb0094D21, complete sequence.
GenBank	AK107618	0.0	AK107618.1 Oryza sativa Japonica Group cDNA clone:002-131-D01, full insert sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0IPW3	0.0	A0A0E0IPW3_ORYNI; Uncharacterized protein
STRING	ONIVA10G03230.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17625	6	6