PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G01080.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BBR-BPC
Protein Properties Length: 422aa    MW: 46050.4 Da    PI: 8.8848
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G01080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind56.99.8e-181123186
        GAGA_bind   1 mdddgsre.rnkg.yyepaaslkenlglqlmssia.erdaki...........rernlalsekkaavaerd....................... 57 
                      mddd+s++ r +g ++e+    ++nlglqlmss++ +rd+k+           +++++  +++++++++rd                       
  ONIVA10G01080.1   1 MDDDASMSiR-WGgFFESP---ARNLGLQLMSSVPaDRDTKQllsgspflhhqHQQQHVPHHHHQPHHPRDcgangnanggamppppateapps 90 
                      9*******66.777***99...88**********99***************99777777*********************************** PP

        GAGA_bind  58 ..maflqrdkalae..rnkalverdnkllalll 86 
                        m+f+++d++++   +++++++r++k+++ ++
  ONIVA10G01080.1  91 mpMNFVRSDMWMHPqqQQQHHHPREHKMMQQQT 123
                      ************9754778999******99886 PP
2GAGA_bind311.43e-95116310108301
        GAGA_bind 108 idslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvln 199
                       +++qq++epq ++++ + +++ee+++++ iee++++++e + +kkrq++++pk+++akk+kk s++++++ ++++a+ +r++ ++k+i++v+n
  ONIVA10G01080.1 116 HKMMQQQTEPQPQPPPPPqQPKEECISSPLIEENVPVIDEPPPPKKRQQGRQPKVPRAKKPKK-SAAPREDGAPPNAPaPRRRGPRKNIGMVIN 208
                      568999999**9999998899******************************************.88999*******999*************** PP

        GAGA_bind 200 gvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHG 293
                      g++lD s++P+PvCsCtGa++qCY+WG+GGWqSaCCtttiS+yPLP+stkrrgaRiagrKmS+gafkk+LekLa+eGy+l+np+DLk++WAkHG
  ONIVA10G01080.1 209 GIDLDLSRIPTPVCSCTGAPQQCYRWGAGGWQSACCTTTISTYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHG 302
                      ********************************************************************************************** PP

        GAGA_bind 294 tnkfvtir 301
                      tnkfvtir
  ONIVA10G01080.1 303 TNKFVTIR 310
                      *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.6E-1121310IPR010409GAGA-binding transcriptional activator
SMARTSM012262.4E-1821310IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDDDASMSIR WGGFFESPAR NLGLQLMSSV PADRDTKQLL SGSPFLHHQH QQQHVPHHHH  60
QPHHPRDCGA NGNANGGAMP PPPATEAPPS MPMNFVRSDM WMHPQQQQQH HHPREHKMMQ  120
QQTEPQPQPP PPPQQPKEEC ISSPLIEENV PVIDEPPPPK KRQQGRQPKV PRAKKPKKSA  180
APREDGAPPN APAPRRRGPR KNIGMVINGI DLDLSRIPTP VCSCTGAPQQ CYRWGAGGWQ  240
SACCTTTIST YPLPMSTKRR GARIAGRKMS HGAFKKVLEK LAGEGYNLNN PIDLKTFWAK  300
HGTNKFVTIR AHSSWALLPS LSDDGLYDQE ILDVAPLQAQ PSSPEVTPAV LQIPMAPEIL  360
DVAPLQAQPS SPEVTPAVLQ IPMAPDISSL SVSGADLHPP AEQRPAPPPP PSVPPVSRPG  420
ST
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876706.11e-168barley B recombinant-like protein A isoform X2
RefseqXP_025876708.11e-168barley B recombinant-like protein B isoform X2
SwissprotP0DH881e-161BBRA_ORYSJ; Barley B recombinant-like protein A
SwissprotP0DH891e-161BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBLA0A0E0IP280.0A0A0E0IP28_ORYNI; Uncharacterized protein
STRINGONIVA10G01080.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.33e-60basic pentacysteine 2
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]