PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G20110.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 366aa    MW: 40036.9 Da    PI: 4.8374
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G20110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.92.4e-541162451128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeelv++yLk+k++g ++el ++i+evd+yk+ePw+L  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v
  ONIVA09G20110.1 116 LPPGFRFHPTDEELVNYYLKRKIHGLNIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRV 208
                      79****************************.99**************84335556888************************************ PP

              NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +g+++g+kktLv+y+grap+g++tdWvmheyrl
  ONIVA09G20110.1 209 VHQhGGRAIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 245
                      99978899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-65107268IPR003441NAC domain
PROSITE profilePS5100560.863116268IPR003441NAC domain
PfamPF023651.6E-29117245IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEKVQASCEG DQGICKRGAK GGHPIDQNLV GGMTMSTGVP TTVPPTPALA ALKNLLIRVV  60
AAAAGKGLSS SAEEARCLWA KLPAPEEEEE AGQQPERPPS SYRRPPTSTL MAPVGLPPGF  120
RFHPTDEELV NYYLKRKIHG LNIELDIIPE VDLYKCEPWE LAEKSFLPSR DPEWYFFGPR  180
DRKYPNGFRT NRATRAGYWK STGKDRRVVH QHGGRAIGMK KTLVYYRGRA PQGVRTDWVM  240
HEYRLDDKDC EDTMPIQDTY ALCRVFKKNA SCTEVEELQG QCSMALLEGA CQQLLASGGG  300
GSQEQYETPS PPDVPVGSTS GGADADAEDD PDKDDSWMQF ISDDAWCSST ADGGAEESTS  360
CVALAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-5111127412171NO APICAL MERISTEM PROTEIN
1ut4_B4e-5111127412171NO APICAL MERISTEM PROTEIN
1ut7_A4e-5111127412171NO APICAL MERISTEM PROTEIN
1ut7_B4e-5111127412171NO APICAL MERISTEM PROTEIN
4dul_A4e-5111127412171NAC domain-containing protein 19
4dul_B4e-5111127412171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00363DAPTransfer from AT3G17730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612702.20.0NAC domain-containing protein 86
TrEMBLA0A0E0IND80.0A0A0E0IND8_ORYNI; Uncharacterized protein
STRINGONIVA09G20110.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37133879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-112NAC domain containing protein 57