PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA09G18260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 201aa MW: 21500.6 Da PI: 4.8381 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.1 | 7.1e-09 | 31 | 71 | 4 | 44 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqV 44 + +f++eq++ Le++F+ + ++ +++ +LA++lgL+ rq ONIVA09G18260.1 31 KKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQL 71 456***********************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-11 | 14 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.37E-7 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.72E-7 | 30 | 70 | No hit | No description |
Pfam | PF00046 | 2.6E-6 | 31 | 71 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MDGEEDSEWM MMDVGGKGGK GGGGGGAADR KKRFSEEQIK SLESMFATQT KLEPRQKLQL 60 ARELGLQPRQ LEKLAEMLQE PRGKYGDNAG DDARSGGVAG MKKEEFVGAG GASTLYSSAE 120 GGGTTTTTTA KLMPHFGSDD VDAGLFLRPS SQHHPPPPHA GAGFTSSEPA ADHQSFNFHS 180 SWPSSTEQTC SSTPWWEFES E |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 25 | GGKGGGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK059755 | 0.0 | AK059755.1 Oryza sativa Japonica Group cDNA clone:006-203-C03, full insert sequence. | |||
GenBank | AK103160 | 0.0 | AK103160.1 Oryza sativa Japonica Group cDNA clone:J033121C04, full insert sequence. | |||
GenBank | AP005681 | 0.0 | AP005681.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1439_F07. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. | |||
GenBank | CT830847 | 0.0 | CT830847.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN030P03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612316.1 | 1e-110 | homeobox-leucine zipper protein HOX6 | ||||
Swissprot | Q651Z5 | 1e-112 | HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6 | ||||
Swissprot | Q9XH35 | 1e-112 | HOX6_ORYSI; Homeobox-leucine zipper protein HOX6 | ||||
TrEMBL | A0A0E0IMP2 | 1e-144 | A0A0E0IMP2_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA09G18260.1 | 1e-144 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7873 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 3e-15 | homeobox 7 |
Publications ? help Back to Top | |||
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