PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G17720.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 284aa    MW: 29759.5 Da    PI: 6.5161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G17720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.7e-12111156454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RR+++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  ONIVA09G17720.1 111 SHVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 156
                      89************************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.021107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15109173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-11110161No hitNo description
PfamPF000101.4E-9110156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-15111170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDELLSPCSS FSPPSPSSMF STGAAAAAAH AVLEFTSCEV PDEWLMGDVV MAKNEEDVGG  60
GELWPVFAGG SLSPDSELSE LPRSFEAAAA QRPAKRRGRK PGPRPDGPTV SHVEAERQRR  120
EKLNRRFCDL RAAVPTVSRM DKASLLADAA AYIAELRARV ARLESDARQA AAARFEPSSC  180
GGGGNASYHG GGGGGGAAPG LDEAVEVRKM GRDAAAVRVT TTGARHAPAR LMGALRSLEL  240
PVQHACVMRV HGATTVQEIL VDVPAALQDG DALRAALLQR LQDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-18110169766Transcription factor MYC2
5gnj_B1e-18110169766Transcription factor MYC2
5gnj_E1e-18110169766Transcription factor MYC2
5gnj_F1e-18110169766Transcription factor MYC2
5gnj_G1e-18110169766Transcription factor MYC2
5gnj_I1e-18110169766Transcription factor MYC2
5gnj_M1e-18110169766Transcription factor MYC2
5gnj_N1e-18110169766Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876009.10.0transcription factor MYC2
TrEMBLA0A0E0IMH20.0A0A0E0IMH2_ORYNI; Uncharacterized protein
STRINGONIVA09G17720.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.12e-10bHLH family protein