PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA09G17110.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 282aa MW: 30992.6 Da PI: 6.7421 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.7 | 1.2e-09 | 117 | 164 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+ l+P + +k Ka iL + ++Y++sLq ONIVA09G17110.2 117 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 164 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.49E-17 | 111 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.51E-11 | 111 | 168 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.0E-17 | 113 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.542 | 113 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.8E-7 | 117 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-10 | 119 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MAGFSHLPQQ MEHGLITNNG FLFCHGSHGG AATTTAPAIP EDASMETSSV VLDTSPQDKK 60 RKPREEDTAS LNSAHSKEAK ENGRKRGGKK HSRDQMEEEA PQGFIHVRAR RGQATDSHSL 120 AERVRRERIS ERMRMLQALV PGCDKVTGKA LILDEIINYV QSLQNQVEFL SMRIASLSPV 180 LYGFGIDSDA FSDHSQKMEG MFHEAVAIPA SVLNRGSSPA QSHAIMDTSN TSPTPYTLQV 240 QGGSNNNSLS QDNGSYIMQT VGEPRQELFN QVVLNNYMCS FQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066188 | 0.0 | AK066188.1 Oryza sativa Japonica Group cDNA clone:J013053A18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611378.1 | 0.0 | transcription factor bHLH137 | ||||
Refseq | XP_015611379.1 | 0.0 | transcription factor bHLH137 | ||||
TrEMBL | A0A0E0IM78 | 0.0 | A0A0E0IM78_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QTL2 | 0.0 | A0A0E0QTL2_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1QQB2 | 0.0 | I1QQB2_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q0J0G7 | 0.0 | Q0J0G7_ORYSJ; Os09g0510500 protein | ||||
STRING | ORUFI09G17270.2 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS09T0510500-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA09G0124100.1 | 0.0 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 2e-40 | bHLH family protein |