PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G17110.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 296aa    MW: 32604.4 Da    PI: 6.8941
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G17110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-09117164455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  ONIVA09G17110.1 117 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 164
                      8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-17111180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.06E-11111168No hitNo description
PROSITE profilePS5088815.542113163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-17113177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6117164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10119169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAGFSHLPQQ MEHGLITNNG FLFCHGSHGG AATTTAPAIP EDASMETSSV VLDTSPQDKK  60
RKPREEDTAS LNSAHSKEAK ENGRKRGGKK HSRDQMEEEA PQGFIHVRAR RGQATDSHSL  120
AERVRRERIS ERMRMLQALV PGCDKVTGKA LILDEIINYV QSLQNQVEFL SMRIASLSPV  180
LYGFGIDSDA FSDHSQKMEG MFHEAVAIPA SVLNRGSSPA QSHAIMDTSN TSPTPYTLQV  240
QGGSNNNSLS QDNGSYIMQT VGEPRQELFN QVGSEFQRLA LDMTFMHASK HGWHGW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661880.0AK066188.1 Oryza sativa Japonica Group cDNA clone:J013053A18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611378.10.0transcription factor bHLH137
RefseqXP_015611379.10.0transcription factor bHLH137
TrEMBLA0A0E0IM770.0A0A0E0IM77_ORYNI; Uncharacterized protein
STRINGONIVA09G17110.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-40bHLH family protein