PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G16520.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 366aa    MW: 38500.8 Da    PI: 4.8282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G16520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.3e-09184231455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  ONIVA09G16520.1 184 SHSLAERVRREKISQRMKVLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 231
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-17178249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-10178235No hitNo description
Gene3DG3DSA:4.10.280.104.2E-17180248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459180230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6184231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-10186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDSDYVAGIL MSAAAAGLDL GVLDGGGGAF LETLCGGPGF AERAARLCGG GAGLFGLPAV  60
GNAERGGCSR EGSSVSDPAW AHATGGGGDN ARKRKAPASA AAGKDKDAVV GGGSSPCEVG  120
EAKAPDSKKC KAEVNPKVEE AASDGSVGDR VQKQGKGKNS SKPAAEPPKD YVHVRARRGQ  180
ATDSHSLAER VRREKISQRM KVLQDLVPGC NKVVGKALML DEIINYVQSL QQQVEFLSMK  240
LATVNPQLDF GNLSTLLQKD MFQSCGPSVN SVFPLESAGT AFPFCDQADF FQSFGLGAME  300
NQCSLDLANT ALPHTGSTQY AFQKQQRDLW EDNTFQYNDE QSQEDAVSAP NFDGQLQAAD  360
HTEIEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0590360.0AK059036.1 Oryza sativa Japonica Group cDNA clone:001-021-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651378.10.0transcription factor BHLH089-like
SwissprotQ9SRT22e-58BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A0E0ILZ20.0A0A0E0ILZ2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QTC50.0A0A0E0QTC5_ORYRU; Uncharacterized protein
TrEMBLA2Z2S80.0A2Z2S8_ORYSI; Uncharacterized protein
STRINGORUFI09G16640.10.0(Oryza rufipogon)
STRINGONIVA09G16520.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.22e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]