PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G15620.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 702aa    MW: 77164.1 Da    PI: 4.5407
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G15620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.56.8e-46111432128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      ppGfrF+Ptdeelv ++Lk+++++ + +    i++vd+yk++P++Lp+  ++++++k+w+fFs+ d+ky++g+r++r+t +gyWkatgkd++++
  ONIVA09G15620.1  11 PPGFRFSPTDEELVLYFLKRRIATGRPTP--YIADVDVYKSHPSHLPErsALRTGDKQWFFFSRMDRKYPNGSRASRTTGEGYWKATGKDRSIC 102
                      8*********************9999555..6**************9435778899************************************** PP

              NAM  94 sk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +       +g++vg kktLv+++grap+ge+tdWvmhey+l
  ONIVA09G15620.1 103 NGggggaaSGRAVGSKKTLVYHHGRAPRGERTDWVMHEYTL 143
                      *98877777777***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-517166IPR003441NAC domain
PROSITE profilePS5100551.60910166IPR003441NAC domain
PfamPF023653.4E-2411143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MGMENPPLRW PPGFRFSPTD EELVLYFLKR RIATGRPTPY IADVDVYKSH PSHLPERSAL  60
RTGDKQWFFF SRMDRKYPNG SRASRTTGEG YWKATGKDRS ICNGGGGGAA SGRAVGSKKT  120
LVYHHGRAPR GERTDWVMHE YTLLADALPP AARDREAYAL YKLFHKSGAG PKNGEQYGAP  180
FREEDWLDDD DHHHDQLPAE AALPAPATTS GRAATTEEHA DFELPGGDLD VLLAQIENDQ  240
DIIEAQLDFS THVTSQVQIQ HRVHQGWLSD DGGKSDVADA TTSGSALLMA ENTCAELPID  300
GLEQLLMQIS DDQQTVEMLS GFSASVPQSQ LQHDDHQGCL GVHREEVGVA DSTTVSSAVV  360
TEECTVRELQ DIEGLLMQIE NDQENAESLP DFSTPVHLHD CHQAAFGDFQ GSQRATFNIA  420
NLSTMVQESP NFDLQTGPSN QITESILTTE PMNGETNAVE ETSPLRSMSV LGSYDRQDGD  480
DEFLEINDFF DPEDLEQILG STTSQNLIPA DDGVFDSLQY SDAPMFLPGS FDTTGVVAEN  540
HYVEFGASGI QNQGFQHTTE LWAHNQVALN VRNHMKDNHV VFSHSSDATI IHTVNEQPPN  600
RSSNASQSWF NGALSALLDS VPSSPAMAAE NIGLNRTLQR ISSFRSQQPA REEVSSTLIN  660
TRRRGGGLIF ISLMVLLVAI MWTFSNGSAV KLSKGLWKFP ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-43814313140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685010.0AK068501.1 Oryza sativa Japonica Group cDNA clone:J013155B08, full insert sequence.
GenBankAK0992370.0AK099237.1 Oryza sativa Japonica Group cDNA clone:J013112C23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611740.10.0NAC domain-containing protein 17 isoform X1
TrEMBLA0A0E0ILN50.0A0A0E0ILN5_ORYNI; Uncharacterized protein
STRINGONIVA09G15620.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91282840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.11e-62NAC domain containing protein 16