PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA09G14370.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 495aa MW: 52974.5 Da PI: 7.232 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.6 | 9.3e-18 | 223 | 272 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ LrellP++ ++K +Ka+ L +++eYI+ Lq ONIVA09G14370.3 223 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 272 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.84E-19 | 218 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-24 | 219 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.34E-16 | 219 | 276 | No hit | No description |
PROSITE profile | PS50888 | 16.952 | 221 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-15 | 223 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-13 | 227 | 277 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MGIQGNKATT REHDFLSLYT TAAKDPSLQL HDAKPPPPSQ GFFLRTHDFL QPLEKPTPAP 60 APPPTSQLQL QQQQQQQAFP GGIGTFSISH VAGARPVAAA VVKAEPTPFV LWGQPAAAAA 120 AHPVAALGHH HHHHHQWTLP FAGVGQVAAT AARQQQERKG RIGGGGFMDS GSRSSGGAGF 180 DDDDGVAARR EVSSSLKELT VRVDGKGGSC SGSGTDQRPS SPRSKHSATE QRRRSKINDR 240 FQILRELLPH SDQKRDKATF LLEVIEYIRF LQEKVQKFEA SVPEWNQENA KILPWSKGQN 300 PGDDLPDPSQ FIRNGSSSGY NFTGKPDDNH NMVTSAAASG AQELVETDHA ASVSYRSAET 360 PTNITNNVTS QAQAQWASPA GVDDCAMNSE MLNNQQLAID EGTISLSSQY SQQLLGTLTH 420 ALESSGVDLS QASISVQINL GKRAVKRPGA DGSSSSKELP STSANNENMG HQLTMLGGGT 480 EELPHPTKRH KSGNS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071315 | 0.0 | AK071315.1 Oryza sativa Japonica Group cDNA clone:J023084K14, full insert sequence. | |||
GenBank | EU837261 | 0.0 | EU837261.1 Oryza sativa Japonica Group clone KCB846A08 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612524.1 | 0.0 | transcription factor BIM3 isoform X1 | ||||
TrEMBL | A0A0E0IL74 | 0.0 | A0A0E0IL74_ORYNI; Uncharacterized protein | ||||
STRING | ORUFI09G14830.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 4e-52 | BES1-interacting Myc-like protein 2 |