PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA09G14370.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 970aa MW: 105825 Da PI: 8.2385

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA09G14370.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.4	2.2e-17	698	747	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ LrellP++ ++K +Ka+ L +++eYI+ Lq ONIVA09G14370.1 698 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 747 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51375	6.423	351	381	IPR002885	Pentatricopeptide repeat
Pfam	PF01535	0.4	356	382	IPR002885	Pentatricopeptide repeat
PROSITE profile	PS51375	9.449	382	416	IPR002885	Pentatricopeptide repeat
Pfam	PF01535	0.19	384	409	IPR002885	Pentatricopeptide repeat
PROSITE profile	PS51375	7.366	493	528	IPR002885	Pentatricopeptide repeat
PROSITE profile	PS51375	5.974	529	559	IPR002885	Pentatricopeptide repeat
PROSITE profile	PS51375	7.103	597	631	IPR002885	Pentatricopeptide repeat
SuperFamily	SSF47459	1.22E-18	693	764	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-23	694	767	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.83E-16	694	751	No hit	No description
PROSITE profile	PS50888	16.952	696	746	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.0E-15	698	747	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-13	702	752	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 970 aa Download sequence Send to blast
MGIQGNKATT REHDFLSLYT TAAKDPSLQL HDAKPPPPSQ GFFLRTHDFL QPLEKPTPAP 60 APPPTSQLQL QQQQQQQAFP GGIGTFSISH VAGARPVAAA VVKAEPTPFV LWGQPAAAAA 120 AHPVAALGHH HHHHHQWTLP FAGVGQVAAT AARQQQERKG RIGGGGFMDS GSRSSGGAGF 180 DDDDGVAARR EVSSSLKERR REGRGEEGRR RSRELMEMEM EMYSRCARPS HIHQLHARLV 240 VSGRLRCTSP SLALALLRAA CRVRASPCLR PLAHHLLDHI PRPHPHLLHA ASRLAYRLRL 300 PSLALRHYVA LRTHHPVFLP PAAAIADMLK SVRGRAAHAH ALRVTAHAGD TRFLDNTLIA 360 MYFACGDVQR ARLVFEGMCD RDVISWTSLI SGLVQNGSPL QGIQQFATMM HCDVRPDFVV 420 LVTIAKAFME LDNLPGAESA HSLVVKGGFH DEQDVMITLT AMYASFGCLV AARALFDMVP 480 PQQDMKLAGV RPNDVTFLGL LSACNHAGAV EKGWSYFHSM KPDYGIEPQH QHYACVVDLL 540 SRAGQLDRAY QFILNMPIKP EMTVWGALLH GCKMHGHSNM AMAECAAQHI FELEQSNAGH 600 YVQLANMYAS AGMWSQVAGM RVTMRERGVT KATGFSFIEV DGKVHSFHAW DHSHPRATEI 660 FAMLCLLSPT PTGGEMRVDG KGGSCSGSGT DQRPSSPRSK HSATEQRRRS KINDRFQILR 720 ELLPHSDQKR DKATFLLEVI EYIRFLQEKV QKFEASVPEW NQENAKILPW SKGQNPGDDL 780 PDPSQFIRNG SSSGYNFTGK PDDNHNMVTS AAASGAQELV ETDHAASVSY RSAETPTNIT 840 NNVTSQAQAQ WASPAGVDDC AMNSEMLNNQ QLAIDEGTIS LSSQYSQQLL GTLTHALESS 900 GVDLSQASIS VQINLGKRAV KRPGADGSSS SKELPSTSAN NENMGHQLTM LGGGTEELPH 960 PTKRHKSGNS

Sequence ? help Back to Top

Protein Sequence Length: 970 aa Download sequence Send to blast

MGIQGNKATT REHDFLSLYT TAAKDPSLQL HDAKPPPPSQ GFFLRTHDFL QPLEKPTPAP  60
APPPTSQLQL QQQQQQQAFP GGIGTFSISH VAGARPVAAA VVKAEPTPFV LWGQPAAAAA  120
AHPVAALGHH HHHHHQWTLP FAGVGQVAAT AARQQQERKG RIGGGGFMDS GSRSSGGAGF  180
DDDDGVAARR EVSSSLKERR REGRGEEGRR RSRELMEMEM EMYSRCARPS HIHQLHARLV  240
VSGRLRCTSP SLALALLRAA CRVRASPCLR PLAHHLLDHI PRPHPHLLHA ASRLAYRLRL  300
PSLALRHYVA LRTHHPVFLP PAAAIADMLK SVRGRAAHAH ALRVTAHAGD TRFLDNTLIA  360
MYFACGDVQR ARLVFEGMCD RDVISWTSLI SGLVQNGSPL QGIQQFATMM HCDVRPDFVV  420
LVTIAKAFME LDNLPGAESA HSLVVKGGFH DEQDVMITLT AMYASFGCLV AARALFDMVP  480
PQQDMKLAGV RPNDVTFLGL LSACNHAGAV EKGWSYFHSM KPDYGIEPQH QHYACVVDLL  540
SRAGQLDRAY QFILNMPIKP EMTVWGALLH GCKMHGHSNM AMAECAAQHI FELEQSNAGH  600
YVQLANMYAS AGMWSQVAGM RVTMRERGVT KATGFSFIEV DGKVHSFHAW DHSHPRATEI  660
FAMLCLLSPT PTGGEMRVDG KGGSCSGSGT DQRPSSPRSK HSATEQRRRS KINDRFQILR  720
ELLPHSDQKR DKATFLLEVI EYIRFLQEKV QKFEASVPEW NQENAKILPW SKGQNPGDDL  780
PDPSQFIRNG SSSGYNFTGK PDDNHNMVTS AAASGAQELV ETDHAASVSY RSAETPTNIT  840
NNVTSQAQAQ WASPAGVDDC AMNSEMLNNQ QLAIDEGTIS LSSQYSQQLL GTLTHALESS  900
GVDLSQASIS VQINLGKRAV KRPGADGSSS SKELPSTSAN NENMGHQLTM LGGGTEELPH  960
PTKRHKSGNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5iww_D	2e-25	334	573	17	322	PLS9-PPR
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101896	0.0	AK101896.1 Oryza sativa Japonica Group cDNA clone:J033070P13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012699577.1	0.0	pentatricopeptide repeat-containing protein At3g12770
TrEMBL	A0A0E0IL72	0.0	A0A0E0IL72_ORYNI; Uncharacterized protein
STRING	ONIVA09G14370.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP762	37	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	5e-50	BES1-interacting Myc-like protein 2