PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G14290.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 495aa    MW: 53147.4 Da    PI: 7.1727
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G14290.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-09324372355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  ONIVA09G14290.3 324 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 372
                      58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.95E-11319376No hitNo description
SuperFamilySSF474597.85E-17319389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.65321371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16322388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-7324372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11327377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MPCVEAGQRC RAQYWQKEGL PSGDTRSWMA KEIYEEKKRR AGRDRRQALL KERKLGIRSL  60
EPRLGDSMDM SESSEKGMES NASSGPGNGI PVEWQSQFSS AFACQPSVAA QHQQHAMMDS  120
FAAASAGLWA SSDVVSAMSS AAPPRGAGFL APVPGFLQQG LGHFPVDSGF IERAARSTCF  180
GGGMMAGGPY GAADQAMGDA FGGTAEGLMD HHRNVGNDKA EEFAGNGHDE VPSSEVAGGD  240
CSSKGSDSKK RRRPNEVMGT DQVHSSNLPS DSANESVHSK DKGEESSPAT TNGGKSKGKG  300
AKETSESQKE EYIHVRARRG QATNSHSLAE RLRREKISER MKLLQDLVPG CSKVTGKAVM  360
LDEIINYVQS LQRQVEFLSM KLATVNPRLD LNIEGLLSKD LLRFPGVPSS SIGFSPEMMH  420
PQLQLSQPGL IHGGTAGMAN PDVFRRIIQA QLGAKDGSQM PHSLNGSFSD VSQMAYPSLG  480
SQDLSIRPSQ DGFQM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1214180.0AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612420.10.0transcription factor bHLH49 isoform X2
TrEMBLA0A0E0IL630.0A0A0E0IL63_ORYNI; Uncharacterized protein
STRINGOGLUM09G14350.40.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.33e-63bHLH family protein