PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G13890.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 352aa    MW: 37152.9 Da    PI: 6.5113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G13890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.3e-14133184155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  ONIVA09G13890.1 133 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 184
                      79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.67E-14131188No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13131188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-17132201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.872132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-11133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10138189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MALEAVLLSR GDLFGRRRCA MEGGGGGGGG GGWSSPFSGF EGVMDLDGGN WDAAACSSML  60
LHGFQELEIP AAAAAAAAMA PPPPPVEPAN CAENAGGVGG HQEDQAAATA VQSGRRKRRR  120
ARAAKNKEEV ESQRMTHIAV ERNRRKQMNE YLAVLRSLMP PSYAQRGDQA SIVGGAINFV  180
KELEQLLQSL EARKSSRQCA AHDAAAAAAP FASFFTFPQY SMSAAAAAAP VAPVVNEVHG  240
RDDGGAGTAE AEASGSKPSA VADVEVTMVE SHANLRVLSR RRPRQLLRLV VALQGHRLTV  300
LHLNMTSAGH MVLYSFSLKV EDDCQLTSVD EIATAAHQII EKIQEEQGCS LD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115119RKRRR
2133144RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612232.10.0transcription factor bHLH94
RefseqXP_015612233.10.0transcription factor bHLH94
SwissprotQ9C7T49e-76BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0E0IL170.0A0A0E0IL17_ORYNI; Uncharacterized protein
TrEMBLA2Z2760.0A2Z276_ORYSI; Uncharacterized protein
STRINGONIVA09G13890.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.12e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]