PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G13640.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 205aa    MW: 21908.8 Da    PI: 8.0628
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G13640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.51.5e-152978254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     rr+h+e+Er+RR+riN  +++Lr l+P+a   +  +++Ka+ L ++v+Y+++L
  ONIVA09G13640.1 29 RRSHSEAERKRRERINAHLDTLRGLVPSA---SRVRMDKAALLGEVVRYVRKL 78
                     99***************************...9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.4E-162781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.5642778IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-152782IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-122781No hitNo description
PfamPF000104.3E-132978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-123384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.1E-4111179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MVAARSGDDA ELGLDVECLA AAPRWTRARR SHSEAERKRR ERINAHLDTL RGLVPSASRV  60
RMDKAALLGE VVRYVRKLRS EAAGSAAVVP GEGDEVVVEE EEVEAARRVK ASVCCADRPG  120
LMSELGDAER SVSARAVRAE IATVGGRTRS VLELDVARTA AAGGGSNGAS QLPALQAALR  180
AVIMSQEELL AVESYKQRRF SADFA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13540ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126171e-169CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875916.11e-71transcription factor bHLH131
TrEMBLA0A0E0IKX71e-138A0A0E0IKX7_ORYNI; Uncharacterized protein
STRINGONIVA09G13640.11e-139(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.14e-16bHLH family protein