PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA09G12720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YC | ||||||||
Protein Properties | Length: 425aa MW: 46812.9 Da PI: 4.7258 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 85.5 | 5.8e-27 | 21 | 121 | 1 | 98 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 q+ fw ++ ie+++df +h++P+ar+kki +++ m++ + P++lsk celf+ el++r+w a++ +r + +dia+a+++t+ +df ONIVA09G12720.1 21 QMDEFWRDRqkeIETTKDFSEHAIPMARLKKIASSQKGNMMMTFDMPAFLSKMCELFVQELAVRAWASAQSHNRCIILDTDIAEAIASTESYDF 114 68899*765566********************************************************************************** PP NF-YC 92 lvdivpr 98 lvdi + ONIVA09G12720.1 115 LVDILHN 121 ***9866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00125 | 1.4E-8 | 24 | 106 | IPR007125 | Histone H2A/H2B/H3 |
SuperFamily | SSF47113 | 1.07E-15 | 44 | 120 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.7E-18 | 45 | 119 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MEQTLDVPRS LRLPTPKAQQ QMDEFWRDRQ KEIETTKDFS EHAIPMARLK KIASSQKGNM 60 MMTFDMPAFL SKMCELFVQE LAVRAWASAQ SHNRCIILDT DIAEAIASTE SYDFLVDILH 120 NHREKHKSTP CSTLTTKRCR LVDQPSTSRP PYQHQLPLFA PTYTPAIPIT PSLMPPISHY 180 IPFQYPSLSQ EVSTMMASAP IVNRSMLLIH NIARGLGLQG NNISTFANNN IPDNIIGCSS 240 PAVLASMMSP ALLDVAGASL NPPNSHSICT MNMINSTDPS GSSIGDINVA NQASLAPSEH 300 FNPAILQESS CPPFLYNNNN DTIVVVPEGV DISGTMDVAS DVAGLVINGQ EEEHERKTNV 360 EQNEIYESID IGIINASVVD GNKCSIRWDE LGTADDSLLD KFLEEFQARN DGVLHSGIVL 420 HEDHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-18 | 31 | 119 | 5 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242226 | 0.0 | AK242226.1 Oryza sativa Japonica Group cDNA, clone: J075175B02, full insert sequence. | |||
GenBank | AP002969 | 0.0 | AP002969.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0455C04. | |||
GenBank | AP003610 | 0.0 | AP003610.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0402A09. | |||
GenBank | AP003727 | 0.0 | AP003727.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0672D08. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622450.1 | 0.0 | uncharacterized protein LOC4326467 isoform X1 | ||||
Refseq | XP_015622453.1 | 0.0 | uncharacterized protein LOC4326467 isoform X3 | ||||
TrEMBL | A0A0E0IKL0 | 0.0 | A0A0E0IKL0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA09G12720.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9174 | 21 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 1e-22 | nuclear factor Y, subunit C4 |