PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G12330.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 339aa    MW: 37177.5 Da    PI: 5.2839
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G12330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK50.73.6e-16200250352
           RWP-RK   3 keisledlskyFslpikdAAke.LgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      k+++ +dl++yF+ + k+AA   L +++T+LK  CR + ++RWP+R+i+sl
  ONIVA09G12330.1 200 KTMTKKDLESYFHITQKSAAHIgLSIGTTALKNLCRANDLPRWPYRQIASL 250
                      899*****************84499***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.356180270IPR003035RWP-RK domain
PfamPF020428.2E-17201250IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MATGGSSSSS NVPSGGAAGG GAGSGKLPMV PVGSIECLRN RCRQLRVLIH VNDHRKAVVV  60
LHAGEDGKPD HVLVQNVSPE GEASVQSTYR IDVSGETPES QAEMLNDWYT SFRMDTTGVL  120
YDSDQNVIYG VPRGHPGGDV PRSLAILPPA PKKNQHGKAP ATESNSSLVE EPLLLVQTDQ  180
PAAIGKRKKF TFPDQRKRVK TMTKKDLESY FHITQKSAAH IGLSIGTTAL KNLCRANDLP  240
RWPYRQIASL DNKFNNNLKK QITGWNLGKA VQGVTKAFKL RKEKEEFYQK IMSSMPEQLQ  300
GIDEIVNSLP EADDDIDIED DEDNDDVIED NDDDNSDEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126171e-155CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696653.11e-165PREDICTED: uncharacterized protein LOC107304984
TrEMBLA0A0E0IKG00.0A0A0E0IKG0_ORYNI; Uncharacterized protein
STRINGONIVA09G12330.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152171212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.12e-08RWP-RK domain-containing protein