PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G11670.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 650aa    MW: 72819.3 Da    PI: 6.474
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G11670.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.69.4e-5761331128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeel+ +yLk+k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v
  ONIVA09G11670.2   6 LPPGFRFHPTDEELIIYYLKRKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKV 98 
                      79****************************.99**************95334455777************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s ++++vg+kktLv+y+grap+g++tdWvmheyrl
  ONIVA09G11670.2  99 NS-QRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133
                      **.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-644156IPR003441NAC domain
PROSITE profilePS5100561.5476156IPR003441NAC domain
PfamPF023651.5E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QRRAVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIIEHYGVV HHHVEQPQWM  180
TSSIDRSPTL DVSCDGRGDD FESSSFSFPT ETPMDSMHGG FGMQMSAPHE DGKWMQFLSE  240
DAFNATNPFL TNPVSANFSC LPSKVDVALE CARLQHRLTL PPLEVEDFPQ DVSLDTKIGI  300
LRSNPNEVDI LQEFLSVATA SQELINGSTS SYPEMWLGAS TSSASYVNEL SSLVEMGGVG  360
TSNHHESARL QVEIADMEVF KDDKKRVENL RGVKLVNNDL GEIVVEGDES NPTEDIIAQY  420
PIKVTADNSG EAGHRMTDPT DVGGIDTAPI FSQSQPDDFA AGFDDVNPNA SFDLYEKVDV  480
NHRLFVSRVA AAKTFFHRIE PSKKVSFHSN PAATAVSKAT EKFHFPVTTK VSGRVSIFSK  540
FKALIRDKFL MMRPSHSYQR LGSKETTVNE LLQIVSLLLA PKQINGCPTE QELVKKKAKE  600
VMKPGWGREG SNKLWLPLSK GKGISSMFLS GKWTFLTSAL AISTPAECDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-55116212171NO APICAL MERISTEM PROTEIN
1ut4_B1e-55116212171NO APICAL MERISTEM PROTEIN
1ut7_A1e-55116212171NO APICAL MERISTEM PROTEIN
1ut7_B1e-55116212171NO APICAL MERISTEM PROTEIN
4dul_A1e-55116212171NAC domain-containing protein 19
4dul_B1e-55116212171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2658210.0AB265821.1 Oryza sativa Japonica Group RIM1 mRNA for NAC protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628513.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628514.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628515.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628518.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628520.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879975.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879976.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879977.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879978.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879979.10.0NAC domain-containing protein 45 isoform X1
TrEMBLA0A0E0IK610.0A0A0E0IK61_ORYNI; Uncharacterized protein
STRINGONIVA09G11670.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-128NAC domain containing protein 28