PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G11510.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 199aa    MW: 20795.1 Da    PI: 4.9037
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G11510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-172474156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     + y+G+r +  +g+Wv+eIr+p   gk+ r++lg++ t+e+Aa+a++aa+++l+g+
  ONIVA09G11510.1 24 PVYRGIRLR--SGKWVSEIREP---GKSSRIWLGTYPTPEMAAAAYDAAALALRGA 74
                     68****986..5*********8...557*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-112473IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-182581IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.5E-272581IPR001471AP2/ERF domain
PROSITE profilePS5103220.1262581IPR001471AP2/ERF domain
SMARTSM003803.4E-272587IPR001471AP2/ERF domain
CDDcd000182.96E-152681No hitNo description
PRINTSPR003671.3E-62637IPR001471AP2/ERF domain
PRINTSPR003671.3E-66383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDRDESLGTQ PLTGRRVRAD TRHPVYRGIR LRSGKWVSEI REPGKSSRIW LGTYPTPEMA  60
AAAYDAAALA LRGADAALNF PGTATSRPAP ASGSPDDIRA AAAAAAAMIG SGHRGNQRAA  120
DASTSRAAPA PEAAVAAGAG DQKRVVDEDD VFEMPRLLVS MAEGLMMSPP RLSPSTDGVG  180
GVSPEDDEDE DGMSLWNHS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880266.11e-109ethylene-responsive transcription factor ERF027
RefseqXP_025880267.11e-109ethylene-responsive transcription factor ERF027
SwissprotQ9FJ909e-41ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0E0IK401e-137A0A0E0IK40_ORYNI; Uncharacterized protein
STRINGONIVA09G11510.11e-138(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-30ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]