PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G10010.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 542aa    MW: 53536 Da    PI: 7.6292
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G10010.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68e-12300345555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  ONIVA09G10010.3 300 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 345
                      99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-16293355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-11293349No hitNo description
PROSITE profilePS5088817.39295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-15297350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-9300345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-14301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MQPTTREMQA MAAAAAAGQI SLDDLRNGGG VAANAGGGGG GVHDDFLDQM LSSLPPSAWP  60
DLAAGKAAED DAEGMHHHHH HHQQQFGGPY DESAMLASRL RQHQISGGGG GGGGGAAAVK  120
QMVLQQLADL RQGHHMMLQG LGGRSPAGGG GGGGDGGLLL PLTLGSGGSG GDVQALLKAA  180
AANSAGGGDA GGVYGGGFAG SLHQQQQHFQ PHPQVLINSL ADISHGSPRL KTLKHRPCVC  240
LQTAPTIPTQ SFGGGGGGGG GGTASGGGAA QPQAGAAGGG APAPPRQRVR ARRGQATDPH  300
SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKA STYTKLLIHV  360
LSMSRLGGAA AVAPLVADMS SEGRGGGAAN GGAPAAAAAA AGSDSLTVTE QQVAKLMEED  420
MGTAMQYLQG KGLCLMPISL ASAISSATCH LRPPVVAAAA AQQFPAGLGA AAAAAHHHQL  480
SAAAAAAAAM RGHLPGLNAD GSVPASPSMS VLTAQSAMAN GGGGAADGEG SQLKDAASVS  540
KP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141149GGRSPAGGG
2304309RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057840.0AP005784.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0014G10.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610785.11e-177transcription factor UNE12 isoform X2
TrEMBLA0A0E0IJL10.0A0A0E0IJL1_ORYNI; Uncharacterized protein
STRINGONIVA09G10010.30.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.19e-46LJRHL1-like 1