PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA09G10010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 514aa MW: 50454.3 Da PI: 7.1162 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.5e-12 | 272 | 317 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq ONIVA09G10010.1 272 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 317 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.53E-16 | 265 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.26E-11 | 265 | 321 | No hit | No description |
PROSITE profile | PS50888 | 17.39 | 267 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-15 | 269 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-9 | 272 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-14 | 273 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MQPTTREMQA MAAAAAAGQI SLDDLRNGGG VAANAGGGGG GVHDDFLDQM LSSLPPSAWP 60 DLAAGKAAED DAEGMHHHHH HHQQQFGGPY DESAMLASRL RQHQISGGGG GGGGGAAAVK 120 QMVLQQLADL RQGHHMMLQG LGGRSPAGGG GGGGDGGLLL PLTLGSGGSG GDVQALLKAA 180 AANSAGGGDA GGVYGGGFAG SLHQQQQHFQ PHPQTAPTIP TQSFGGGGGG GGGGTASGGG 240 AAQPQAGAAG GGAPAPPRQR VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT 300 DKASMLDEII DYVKFLQLQV KASTYTKLLI HVLSMSRLGG AAAVAPLVAD MSSEGRGGGA 360 ANGGAPAAAA AAAGSDSLTV TEQQVAKLME EDMGTAMQYL QGKGLCLMPI SLASAISSAT 420 CHLRPPVVAA AAAQQFPAGL GAAAAAAHHH QLSAAAAAAA AMRGHLPGLN ADGSVPASPS 480 MSVLTAQSAM ANGGGGAADG EGSQLKDAAS VSKP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 149 | GGRSPAGGG |
2 | 276 | 281 | RLRRER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005784 | 0.0 | AP005784.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0014G10. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610785.1 | 0.0 | transcription factor UNE12 isoform X2 | ||||
TrEMBL | A0A0E0IJK9 | 0.0 | A0A0E0IJK9_ORYNI; Uncharacterized protein | ||||
STRING | OMERI09G08040.2 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 3e-46 | LJRHL1-like 1 |