PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA09G09820.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ZF-HD

Protein Properties

Length: 113aa MW: 11816.1 Da PI: 7.9954

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA09G09820.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	93.5	1.8e-29	19	87	1	60
ZF-HD_dimer 1 kekvrYkeClkNhAaslGghavDGCgEfmpsegee.gt........aaalkCaACgCHRnFHRreveee 60 +++vrY eC++NhAas+GghavDGC+Ef+++e+ g+ aaalkCaACgCHR+FHRr +++e ONIVA09G09820.1 19 CCGVRYGECRRNHAASTGGHAVDGCREFIAAEDGGgGNstgavgvaAAALKCAACGCHRSFHRRVQVYE 87 5789*************************888855599*99***************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	7.0E-31	1	91	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.2E-26	22	84	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.6E-19	23	82	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	23.886	24	83	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MMKRLVVLRR REPAVRFSCC GVRYGECRRN HAASTGGHAV DGCREFIAAE DGGGGNSTGA 60 VGVAAAALKC AACGCHRSFH RRVQVYEVAW DDDCASGDTS SSSPSSSSSL SSE

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK058840	0.0	AK058840.1 Oryza sativa Japonica Group cDNA clone:001-004-D10, full insert sequence.
GenBank	AP005636	0.0	AP005636.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0707C02.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBank	CT830576	0.0	CT830576.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN030C08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611485.1	2e-75	mini zinc finger protein 2
Swissprot	A2Z182	2e-76	MIF3_ORYSI; Mini zinc finger protein 3
Swissprot	Q6ER22	2e-76	MIF3_ORYSJ; Mini zinc finger protein 2
TrEMBL	A0A0E0IJI5	8e-75	A0A0E0IJI5_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0QRE0	8e-75	A0A0E0QRE0_ORYRU; Uncharacterized protein
STRING	ORUFI09G10930.1	1e-75	(Oryza rufipogon)
STRING	ONIVA09G09820.1	1e-75	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	6e-12	mini zinc finger 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]