PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G09620.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 295aa    MW: 31899.3 Da    PI: 5.384
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G09620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM147.47.4e-46231661128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pk...........kvkaeekew..yfFskrdkkyatgkrknratks 80 
                      lppGfrF+Ptd elv +yL++k+++  ++   +i+++d+y++ePwdL p            + ++ee+e   yfF++r+ + ++g+r+nrat++
  ONIVA09G09620.1  23 LPPGFRFRPTDGELVAHYLARKAADAGFTS-AAIRDADLYRAEPWDLlPPprcdaaaeeeeE-EEEEEERcgYFFCTRSFRWPSGTRTNRATAA 114
                      79*************************999.78**************622457877765431.112222258********************** PP

              NAM  81 gyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      gyWk+tgkdk+vl+     +g+ vg+kktLvfy+grap+gekt+Wvmheyrl
  ONIVA09G09620.1 115 GYWKSTGKDKAVLHGggggGGRPVGVKKTLVFYRGRAPRGEKTSWVMHEYRL 166
                      **************988877888***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-5114198IPR003441NAC domain
PROSITE profilePS5100550.85223198IPR003441NAC domain
PfamPF023654.5E-2724166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAGGGGGDRA PSSSSTAMIS RLLPPGFRFR PTDGELVAHY LARKAADAGF TSAAIRDADL  60
YRAEPWDLLP PPRCDAAAEE EEEEEEEEER CGYFFCTRSF RWPSGTRTNR ATAAGYWKST  120
GKDKAVLHGG GGGGGRPVGV KKTLVFYRGR APRGEKTSWV MHEYRLLHGG AAATASSSPT  180
PTTVVARSEW VICRVFVRKT PDGNNDRGTT EHHLPSDDAH LRSSPAPANS VDGAGHASCS  240
FFSGANESMA PSDHFNIGDD MILHGHDEEE LLMMNCSSAF DLPELLDYES FSLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-402320015170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641910.0AK064191.1 Oryza sativa Japonica Group cDNA clone:002-104-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611185.10.0NAC domain-containing protein 79
SwissprotQ9FLR32e-52NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A0E0IJG00.0A0A0E0IJG0_ORYNI; Uncharacterized protein
STRINGONIVA09G09620.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153521618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.12e-51NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]