PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G09550.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 363aa    MW: 37698.9 Da    PI: 5.7947
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G09550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-13108154354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+h+e+ErrRR+riN  +++Lr+ll +      +K +Ka+ L +++e++k+L
  ONIVA09G09550.1 108 RSHSEAERRRRQRINGHLARLRSLLANT-----TKTDKASLLAEVIEHVKEL 154
                      78***********************998.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.056105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.21E-12108157No hitNo description
PfamPF000101.3E-10108154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-13109159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12109161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-12111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550216.41E-5217264No hitNo description
Gene3DG3DSA:3.30.70.2603.0E-6217264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MWEGGSHDAA AQLLPWFVGE PAAAAVGGYG GCVDVVGQGG VFGFGFEAAA APVVTRQQRG  60
GAAAAEGSSR GGGGKPAVVS GLLGSLQAEL GRVTAREIMD AKALAASRSH SEAERRRRQR  120
INGHLARLRS LLANTTKTDK ASLLAEVIEH VKELKRQTTA IAAAAAAGDY HGNDEDDDDA  180
VVGRRSAAAQ QLLPTEADEL AVDAAVDAEG RLVVRASLCC EDRPDLIPDI ARALAALRLR  240
ARRAEITTLG GRVRSVLLIT ADEQQQQHCD DVDDDEDGHR LLLRHGIDGA GAAAGDDDEC  300
AASHRRHECI ATVQEALRGV MDRRAAASSG DTSSSGGAVV AGGGGGSIKR QRMNYGVHEQ  360
CSV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651269.10.0transcription factor bHLH30
TrEMBLA0A0E0IJF10.0A0A0E0IJF1_ORYNI; Uncharacterized protein
STRINGONIVA09G09550.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-38bHLH family protein