PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G06790.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 1256aa    MW: 142531 Da    PI: 6.1975
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G06790.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.62.1e-2025119186
         trihelix   1 rWtkqevlaLiearremeerlr...rgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                      rWt+qe+l+Lie++  +e r +   r +          + +++W++v++++r++g+er+  qC+++w+nl+++y ki+++e++ + +     p 
  ONIVA09G06790.3  25 RWTRQEILVLIEGKHAVEGRGSgmgR-AaaasygeaaaALETKWAAVAEFCRRHGVERGTAQCRKRWSNLARDYNKIERWERGAAGGW---EPS 114
                      8**************99999884332.03455555655889*****************************************864333...366 PP

         trihelix  82 fdqle 86 
                      f +++
  ONIVA09G06790.3 115 FWDMH 119
                      66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.2022594IPR017877Myb-like domain
PfamPF138372.2E-925119No hitNo description
Gene3DG3DSA:1.10.10.606.6E-42594IPR009057Homeodomain-like
SuperFamilySSF525401.88E-53401694IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.0E-48450722IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3003.1E-9451609IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003647.7E-12454469No hitNo description
PRINTSPR003647.7E-12529543No hitNo description
PRINTSPR003647.7E-12630644No hitNo description
SuperFamilySSF520583.4E-36754956IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.0E-16797937IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.1E-1310201243IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520583.4E-3610331242IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003647.7E-1211041120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1256 aa     Download sequence    Send to blast
MSGDPAGAAN AAAAASAAKP PRLPRWTRQE ILVLIEGKHA VEGRGSGMGR AAAASYGEAA  60
AALETKWAAV AEFCRRHGVE RGTAQCRKRW SNLARDYNKI ERWERGAAGG WEPSFWDMHN  120
DARREMRLPG FFDREVYDIL DSRRLAFVNE MVFDSGRPAA EESLFSDDEE EDWVFQDDEE  180
EEAPPVTAAA SASPAQAPHG QLIALPISEK SEASRHQRTE QRESFSSMEP LSYTTPEMKM  240
ETDAVQLNCD WPMQTLQGHG SSEPSEKSAV QQSDDTNSRL HRDKQWAVQD KRLVLQRTLT  300
EMHTFIKHAE WWFHKDVFAQ LLQDAKDAVN CAEDLLDEIN YHEFQNKVEG HAVLFHVQDY  360
HETKIDKIQR KLEHLVRQME QLGLYDERQQ LIIESISRED NLFAEEQTIF GRQKEMSELI  420
ELIVLQENSP TDKQVTEVHA VPDCKRAKLE NVSVLPIVGS GGVGKTTLAN LVFNERSVRD  480
HFDLLIWICV SDGFDEKKLM KRLAWSVAEN EMKTDDLGCL QRILTNGIIH HTRRVLLVLD  540
DVQTDACRED CHGWKNFLAP LKYARSGSMV LVTTRYHRVA ERVGTLKHMF LEGLPEETIW  600
EFFRMLTFGS RNSNSNAVLE PIGRSIVARL DGSSLGIKII GRLLSLKLDA KYWKIILESE  660
LWGWPHQEEA SIFTALQLSY QYLPFHLKRC FSFCSLYPRG YEFDAETLVD SWVAVGFVMP  720
SRSILAVDIG HVYFNQLVSR SFFQRSPTSS RYVIHDLLHD MAQYVARNDC FIIKSRCGMS  780
RIPPKVRHVS ILGNGELSST DIECLNTYKT LRSIVCIGVG CDIITNSVLE TWFDHLTRIR  840
MLRFISCRLK ELPCNVGKLI HLRYLDISAC DFDKLPTDLF CRLYKLEILD AQNCTLHAVP  900
KDIIKLVNLQ RLRLKDDLIS QLGRVPEVGK LTLLQNMPYY AVDDKPGRGI QELKNMNHLH  960
GGLEIDGLRN VTSREEVAGA ELAKKIYFDT LVLKWHESIR PQKHNSTKEM EVLEALRPSS  1020
NIKHLEVKFY MGDGLSPMWL RHDELSSLAS LSINSCPNTT TLFLIEPSET GSSRSSSVSF  1080
QSLTKLSITW CRSLTSLDNF LQPECLPMIK VIQISNCEEL ASLPTNNLVH FVHLEDLEIC  1140
HCWNLNWEPG LALPPSLKSL KLEACGEFSD STLSCLHNLT ALTILNLRFC PSIESISAQI  1200
WSGLWSIENL KIVCCQGLVT VGGSESIAGI KNVDIRHCSK LQDLEQPFRS GQADSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C4e-414461128176837Disease resistance RPP13-like protein 4
6j5t_F4e-414461128176837Disease resistance RPP13-like protein 4
6j5t_G4e-414461128176837Disease resistance RPP13-like protein 4
6j5t_L4e-414461128176837Disease resistance RPP13-like protein 4
6j5t_O4e-414461128176837Disease resistance RPP13-like protein 4
6j5u_A4e-414461128176837Disease resistance RPP13-like protein 4
6j5v_A4e-414461128176837Disease resistance RPP13-like protein 4
6j5w_A4e-414461128176837Disease resistance RPP13-like protein 4
6j6i_C4e-414461128176837Disease resistance RPP13-like protein 4
6j6i_F4e-414461128176837Disease resistance RPP13-like protein 4
6j6i_G4e-414461128176837Disease resistance RPP13-like protein 4
6j6i_L4e-414461128176837Disease resistance RPP13-like protein 4
6j6i_O4e-414461128176837Disease resistance RPP13-like protein 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054220.0AP005422.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0441A12.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612318.10.0putative disease resistance protein RGA3
TrEMBLA0A0E0IIF10.0A0A0E0IIF1_ORYNI; Uncharacterized protein
STRINGONIVA09G06790.40.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.15e-32Trihelix family protein