PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA09G04490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 500aa MW: 52750.5 Da PI: 6.6384 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 67.6 | 3.4e-21 | 17 | 152 | 8 | 125 |
NAM 8 hPtdeelvveyLkkkvegkklelee.........vikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWka 85 hPt++el++ yL++++ ++++ + +i+++d y ++P dL + +++ +++ wyfFs+ ++++++g+r+ ra++ +g W++ ONIVA09G04490.1 17 HPTEQELISSYLHPRLLLTTTKPAAavaaggvpsFIHHADAYAADPADLTArhlpaRAADGSRAWYFFSPVRTTTERGTRRARAVEsgDGCWHS 110 9**************88877333234566777768**************84466666666888********************87744788*** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkge..ktdWvmhe 125 ++v+++ g+ vg ++ + f k+r+++g+ +t W+m e ONIVA09G04490.1 111 ESGVRAVVDAAGRRVGHRQFFSFVKKREEDGKrvRTGWLMVE 152 ************************99999887558*****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 28.563 | 10 | 176 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-30 | 17 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-12 | 17 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MADADADACP AVFASRHPTE QELISSYLHP RLLLTTTKPA AAVAAGGVPS FIHHADAYAA 60 DPADLTARHL PARAADGSRA WYFFSPVRTT TERGTRRARA VESGDGCWHS ESGVRAVVDA 120 AGRRVGHRQF FSFVKKREED GKRVRTGWLM VELGVDNDAA SASSSNELVL CKIYMTPRMP 180 PPSPPSAVTS SAAATMELMP RAPPPSAPSA VTSPAVTTME LMAGGVHKRR KISDEIAAAA 240 TPPHPQQQRR QRCVPDNDGS KESSGESSYV VILDDDDDDA DAPEDGGAVR SKLRSDDGVM 300 LADARDDEQH AATSDSMAGT SGGAVTGGGH GKLLPDLNVV ATVAHDDEGR HARGAPRPQD 360 GGTSTTTTMV ASAGAERGST TGHLPAATAG YRRTLMLFLE EEDDDAVEDE QQQQQAPPLP 420 PATSTATTTT RTAAEANVQR QRQPPCCTFV VHPCAAHAKM RHGAAYGCGC RVTGAVRRGG 480 YHLPRRAVHT TTTTTTTTGQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611524.1 | 0.0 | PH domain leucine-rich repeat protein phosphatase 1 | ||||
TrEMBL | A0A0E0IHK8 | 0.0 | A0A0E0IHK8_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA09G04490.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17457 | 9 | 9 |