PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G02600.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 411aa    MW: 44158.7 Da    PI: 9.0583
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G02600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like38.13.4e-123458125
          G2-like  1 kprlrWtpeLHerFveaveqLGGse 25
                     kprlrWt +LH+rFv+av+qLGG++
  ONIVA09G02600.1 34 KPRLRWTADLHDRFVDAVAQLGGPD 58
                     79*********************98 PP
2G2-like48.71.6e-152242532655
          G2-like  26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +AtPkti+++m+vkgLtl h+kSHLQkYRl
  ONIVA09G02600.1 224 EATPKTIMRTMGVKGLTLFHLKSHLQKYRL 253
                      7****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-263159IPR009057Homeodomain-like
SuperFamilySSF466891.97E-5223255IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-9224254IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.1E-26225254IPR009057Homeodomain-like
PfamPF143791.3E-20294339IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MFPGLIHHHR LLDADVGGGG GGSSAGLVLT ADPKPRLRWT ADLHDRFVDA VAQLGGPDTE  60
GSGGSGWRDG GRGGFKYGAC GGGESGICGG AQGRLPPAAA AAASRKDQSF STTSATAMPS  120
GSAATGPARR EGGEHARPWM GERVVFAGKV ERRAAASAGW RFTIVGTRKY AFPRDLTRTS  180
SLEEPRDMLQ LLVRDGEDDL LSAVHQRSQQ PMVRAAAEHA HMLEATPKTI MRTMGVKGLT  240
LFHLKSHLQK YRLGKQSGKE MAEQSKDASY ILGAQSGTNL SPTVPTPDLK ESQELKEALR  300
AQMEVQRKLH EQVEVQRHVQ IRMEAYQNYI DTLLEKACNI VSEQLNGFSI SDHDLTSAGV  360
MLSSSDTLSP SIFHQLSVSS ISLHSPGGKS SPFAADADLF FQKAPEKRKS Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1038730.0AK103873.1 Oryza sativa Japonica Group cDNA clone:J033149L11, full insert sequence.
GenBankCT8342320.0CT834232.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN036L13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650961.11e-130protein PHR1-LIKE 3
TrEMBLA0A0E0IGX40.0A0A0E0IGX4_ORYNI; Uncharacterized protein
STRINGONIVA09G02600.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34273873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.18e-42G2-like family protein