PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA09G02590.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 285aa    MW: 31034.6 Da    PI: 6.5165
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA09G02590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.82.5e-332377155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     ++rlrWt+eLH+rFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  ONIVA09G02590.1 23 RQRLRWTNELHDRFVEAVTQLGGPDRATPKGVLRIMGVPGLTIYHVKSHLQKYRL 77
                     58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.7572080IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-322278IPR009057Homeodomain-like
SuperFamilySSF466893.05E-182277IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-262478IPR006447Myb domain, plants
PfamPF002497.2E-92576IPR001005SANT/Myb domain
PfamPF143791.4E-23109155IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MELGNNAIVP SNGGNNNPNM AARQRLRWTN ELHDRFVEAV TQLGGPDRAT PKGVLRIMGV  60
PGLTIYHVKS HLQKYRLAKY IPDPSADDNK DEDKDPGNLL SALEGSSGMQ ISEALKLQME  120
VQKRLHEQLE VQRQLQLRIE AQGKYLQKII EEQQRVIGAG ASRATSSEQL PDSVKTNPPT  180
PVPISESPVQ GASRSKNSQS QVEPTKSPSH DDALPCGEPL TPDSSCRPGS PTLSPKHERA  240
AKRQRGSDAG DVTAFADGEF VLPHGIFESS TGSEFQECSM PYSGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-242380158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-242380158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-242380158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-242380158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043960.0AP004396.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0404D10.
GenBankAP0044590.0AP004459.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0410E11.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648505.10.0myb family transcription factor PHL7
SwissprotQ9SJW01e-91PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0E0IGX20.0A0A0E0IGX2_ORYNI; Uncharacterized protein
STRINGONIVA09G02590.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-78G2-like family protein