PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA09G01330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 25969.2 Da PI: 6.954 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.6 | 4.1e-38 | 30 | 130 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+k+Cv+apyf++eq +++fa++hk+FGasn +k+l +lp ++r +a+ ++ yeA+ar+rdP+yG+v++i++lqqq+ +l+a+ ONIVA09G01330.1 30 PCGACKFLRRKCVKGCVFAPYFCHEQgAAHFAAIHKVFGASNASKILMHLPVSDRCEAAVTMSYEAQARLRDPIYGCVAHIFSLQQQVVSLQAQ 123 7*************************89****************************************************************** PP DUF260 94 lallkee 100 l++lk++ ONIVA09G01330.1 124 LESLKAQ 130 **99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.695 | 29 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.7E-36 | 30 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MQYDPYHNQQ GARIRPTTAS RTRMTGLGSP CGACKFLRRK CVKGCVFAPY FCHEQGAAHF 60 AAIHKVFGAS NASKILMHLP VSDRCEAAVT MSYEAQARLR DPIYGCVAHI FSLQQQVVSL 120 QAQLESLKAQ ATQGYGDGCS ISSPQNDSCG NMLTSIVQDE QQFVGPTMAS NSSVKNENHS 180 YIANGHLAPM SAQSSQGFEA ELCMAEYSNT NPCCSVQGNW YHDMEDLQSV AFAYLNQA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-34 | 26 | 126 | 7 | 106 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-34 | 26 | 126 | 7 | 106 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP004587 | 0.0 | AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648252.1 | 1e-161 | LOB domain-containing protein CRL1-like | ||||
TrEMBL | A0A0E0IGE8 | 1e-179 | A0A0E0IGE8_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA09G01330.1 | 1e-180 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2501 | 38 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G58190.1 | 3e-54 | lateral organ boundaries-domain 29 |