PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA09G00820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 185aa MW: 20151.1 Da PI: 4.8394 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.4 | 1.6e-12 | 8 | 49 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 e++ r+v fskRr+ ++K A+ELSv +a+va ++fs+ g ONIVA09G00820.1 8 MESEEARKVCFSKRRADLFKMASELSVHFNADVAAVVFSPAG 49 689999**********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-5 | 3 | 58 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.848 | 6 | 49 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-14 | 6 | 69 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-17 | 7 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MVASRRKMES EEARKVCFSK RRADLFKMAS ELSVHFNADV AAVVFSPAGN RAYSIGDPSV 60 MDRFLSSLPA PAPPAETEPE PEVDWSVMEE LSRQCGQLQA MVDAHKARLE KAEEKLRESG 120 AAAWMMDLEA EVGRMAPEDV LALVTKLAVL RDGVAERAHE MLREALLAVA APTPTTTTTP 180 PPAGF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611505.1 | 1e-128 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A0E0IG93 | 1e-130 | A0A0E0IG93_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA09G00820.1 | 1e-130 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP20261 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 6e-14 | AGAMOUS-like 29 |