PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA09G00190.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 550aa MW: 62637.8 Da PI: 6.6145

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA09G00190.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.8	3.6e-13	163	238	15	90
FAR1 15 rkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 r ++++ks ++ge k fvC+k g +e++ ++ +k+r+++ + + Ck +l+vk++ ++wev+++++eH+H+l+ ONIVA09G00190.1 163 RAHYNRKSAKDGERDKVMFVCNKCGPEEKTGEAcPTKKRKRSRTRQAACKTRLTVKRK-GARWEVIQFVEEHTHPLV 238 56788999******************99999666777777778899*****9.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.8E-11	164	238	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence Send to blast
MDFDLNSIPE LVSSENEPPV HHLLVDDEDI TWMIPAINLD YTFDFETMYT AGDVGSLQAH 60 NVANDEMQVF EANDEMQVFA TNDEMQVFEA NDEMQVFEEM SDHADTMHTS VATGATTATA 120 NTISSQDSRT DDSEAQSVPS QDIPCSTQVP YLILTFNSEE EARAHYNRKS AKDGERDKVM 180 FVCNKCGPEE KTGEACPTKK RKRSRTRQAA CKTRLTVKRK GARWEVIQFV EEHTHPLVRK 240 FSLKKFLRSH RAIPKEEKDF ITMLHGVNIS AGRIMKLMSE LYGGARNVPY TRKDISNFKS 300 KLGSEYRCRD IPEPIAHFEE IKKDDPNFFY KIQLDKEDRV QNIFWVDGAA RNAYKDFKDC 360 VSFDCIYMMN MYNMPCAPFI GINRHGQSIQ TTAQSEGFNA VLKRYVMTSD FVGQVSDIPE 420 HYILPRWTMV KKPELPPVTS IGEQMQLPPE SLKLIRYTNM CTKFTHIAKD ASSNEKAYRM 480 ALQRRSSMTD DLAAMKQSRK KQKKAQPAPA DPARGISDIP SASTNPTLQI NDPPPHHTKA 540 RETSFNKTQA

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence Send to blast

MDFDLNSIPE LVSSENEPPV HHLLVDDEDI TWMIPAINLD YTFDFETMYT AGDVGSLQAH  60
NVANDEMQVF EANDEMQVFA TNDEMQVFEA NDEMQVFEEM SDHADTMHTS VATGATTATA  120
NTISSQDSRT DDSEAQSVPS QDIPCSTQVP YLILTFNSEE EARAHYNRKS AKDGERDKVM  180
FVCNKCGPEE KTGEACPTKK RKRSRTRQAA CKTRLTVKRK GARWEVIQFV EEHTHPLVRK  240
FSLKKFLRSH RAIPKEEKDF ITMLHGVNIS AGRIMKLMSE LYGGARNVPY TRKDISNFKS  300
KLGSEYRCRD IPEPIAHFEE IKKDDPNFFY KIQLDKEDRV QNIFWVDGAA RNAYKDFKDC  360
VSFDCIYMMN MYNMPCAPFI GINRHGQSIQ TTAQSEGFNA VLKRYVMTSD FVGQVSDIPE  420
HYILPRWTMV KKPELPPVTS IGEQMQLPPE SLKLIRYTNM CTKFTHIAKD ASSNEKAYRM  480
ALQRRSSMTD DLAAMKQSRK KQKKAQPAPA DPARGISDIP SASTNPTLQI NDPPPHHTKA  540
RETSFNKTQA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	198	203	KKRKRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	0.0	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0IG13	0.0	A0A0E0IG13_ORYNI; Uncharacterized protein
STRING	ONIVA09G00190.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5595	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-34	FAR1-related sequence 5