PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G27000.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 300aa    MW: 32658.3 Da    PI: 7.5
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G27000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.5e-30153211259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ dp+++++tY+++Hnh+
  ONIVA08G27000.1 153 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRADPTMLVVTYTSDHNHP 211
                      699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.374147213IPR003657WRKY domain
SuperFamilySSF1182907.19E-26151213IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-30151213IPR003657WRKY domain
SMARTSM007741.4E-36152212IPR003657WRKY domain
PfamPF031061.6E-25154211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MCDSLFWQSS ADQGDLSDVV RASLQLQTAP RHQAASPPYV HLLGGGGGGG GEDQLAAVSQ  60
HAEQQQQSMV DASAACDLLH ALLPPPPVVQ VQQQGASRTR TTIEEDTTGD GEELFAGAHY  120
VVPPIKRRKS QTKKVVCIPA GASGGGGGEV VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS  180
SKGCSARKQV ERSRADPTML VVTYTSDHNH PWPTHRNALA GSTRPSSSNS SNIRLQDSTP  240
VHHQSQTGHD RLTTTHLKQE DVIISPSLLQ PDHHQLCTII DTKHHLLFHQ DYPHSFGFFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-24129214280Disease resistance protein RRS1
5w3x_D3e-24129214280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9546100.0KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613758.10.0protein WRKY1
RefseqXP_015613759.10.0protein WRKY1
TrEMBLA0A0E0IFY20.0A0A0E0IFY2_ORYNI; Uncharacterized protein
STRINGONIVA08G27000.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-54WRKY DNA-binding protein 35