PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G25630.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 491aa    MW: 52290.6 Da    PI: 6.0885
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G25630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.84.6e-351112022102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+++ll+
  ONIVA08G25630.1 111 FLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGERRLLC 195
                      9*****************************************************************99.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  ONIVA08G25630.1 196 EIHRRKV 202
                      ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.4E-38102195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-59107200IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.98E-35108200IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-31111200IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-20111134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-20149161IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340150174IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-20162174IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MKGSRLAVKE SCLPMTMPMP ETFAQYSNPL RSTRAYGQLC RKQPDTTVYP GQICAAAGGG  60
GGMADQTAAA VVVVGGAAAT MGEPSPPPPA PAAEAAGVGV GQQQRTVPTP FLTKTYQLVD  120
DPAVDDVISW NDDGSTFVVW RPAEFARDLL PKYFKHNNFS SFVRQLNTYG FRKIVPDRWE  180
FANDCFRRGE RRLLCEIHRR KVTPPAPAAT TAAVAAAIPM ALPVTTTRDG SPVLSGEEQV  240
ISSSSSPEPP LVLPQAPSGS GSGGVASGDV GDENERLRRE NAQLARELSQ MRKLCNNIIL  300
LMSKYASTQQ LDAANASSAA GNNNNNNCSG ESAEAATPLP LPAVLDLMPS CPGAASAAAP  360
VSDNEEGMMS AKLFGVSIGR KRMRHDGGGD DDHAATVKAE PMDGRPHGKD EQSAETQAWP  420
IYRPRPVYQP IRACNGYEYD RAGSDQDEYG AKPSNQDKKD LRTCVNNLLV TGAGTLDVRD  480
QLPTQATTVR S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A5e-261072037112Heat shock factor protein 1
5hdn_A5e-261072037112Heat shock factor protein 1
5hdn_B5e-261072037112Heat shock factor protein 1
5hdn_C5e-261072037112Heat shock factor protein 1
5hdn_D5e-261072037112Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444840.0AY344484.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875859.10.0heat stress transcription factor B-2b isoform X2
SwissprotQ6Z9C80.0HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A0E0IFF00.0A0A0E0IFF0_ORYNI; Uncharacterized protein
STRINGONIVA08G25630.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.15e-61heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]