PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G25370.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 263aa    MW: 27613.4 Da    PI: 7.5116
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G25370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-1395139554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h e+Er+RR+++N +f eLr  +P+       +++Ka+ L  Av+YI +L
  ONIVA08G25370.1  95 HVEAERQRREKLNRRFCELRAAVPTV-----SRMDKASLLADAVDYIAEL 139
                      889**********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.85390139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.57E-1395144No hitNo description
SuperFamilySSF474597.46E-1795155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-1795151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-1195139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-1296145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDELVLSPSS FSATACFPTL DFEFCEVPDQ WLLGLGHDEL DKDAAASALA AAAASQSASN  60
DDVPRNPPAT TTTTKRRGRK PGPRSGGGGA PPIGHVEAER QRREKLNRRF CELRAAVPTV  120
SRMDKASLLA DAVDYIAELR RRVERLEAEA RRAPLAPSAA AAAAWAAGLG AGAIGRDDLV  180
VRMVGRDAAI LRLTTAAAAA RHAPARMMCA VRGLNLAVQH ASVARVGGAT VQDVMVDDVP  240
AALQDEASLR AALLHTLQLA DTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-2088149263Transcription factor MYC2
5gnj_B3e-2088149263Transcription factor MYC2
5gnj_E3e-2088149263Transcription factor MYC2
5gnj_F3e-2088149263Transcription factor MYC2
5gnj_G3e-2088149263Transcription factor MYC2
5gnj_I3e-2088149263Transcription factor MYC2
5gnj_M3e-2088149263Transcription factor MYC2
5gnj_N3e-2088149263Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039140.0AP003914.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1521_G02.
GenBankAP0046320.0AP004632.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0623F08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649359.10.0transcription factor bHLH14
TrEMBLA0A0E0IFB90.0A0A0E0IFB9_ORYNI; Uncharacterized protein
STRINGONIVA08G25370.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.14e-16bHLH family protein