PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G23980.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 405aa    MW: 42303 Da    PI: 6.3758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G23980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.6e-09214261455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  ONIVA08G23980.1 214 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 261
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-16208275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.86E-10208265No hitNo description
Gene3DG3DSA:4.10.280.107.9E-16210273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.301210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6214261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-10216266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDGGRVGGDY ISSLLSSSPR FDFGVPVLDA VVAPGGGGGG GDCGLDKLCG DPGFAERAAR  60
LSSFNNGGGG VGQRYGGAGA GLFGMPPPAP GDFAGGGSRE ASSVSDPASS AMKDAAANAK  120
KRKSTAAAAA AAKGKGKEPP VGEEKESDGK RCKTGNGEKE SSVKPKAEQA GSDSSVEDGG  180
GGGQKQGKGK NAKPVEPPKD YVHVRARRGQ ATDSHSLAER VRRERISQRM KVLQDLVPGC  240
NKVIGKALML DEIINYVQSL QRQVEFLSMK LATVNPLDFS NLPTLLQKDM FQACGPSASS  300
VFSLESSNSA FPFAEQGDVF QQFAQNSMES QCTLNQLDLA LSQATNAAQY AFQDGTAGAS  360
LQQRNFWEDD LQSVFHIENG QSQENGVSAP NFHGQLQAGH MKMEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0992910.0AK099291.1 Oryza sativa Japonica Group cDNA clone:J023127C06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648582.10.0transcription factor BHLH094-like
TrEMBLA0A0E0IES70.0A0A0E0IES7_ORYNI; Uncharacterized protein
STRINGONIVA08G23980.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.33e-53bHLH family protein