PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G23410.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 198aa    MW: 21875.7 Da    PI: 5.2568
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G23410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.68.8e-38451441100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaC++lrr+Ca+dCvlap fpa++p+++a+vh++FGasnv +ll++lp  er +a++++++eA +r++dPvyG++g+i++lq++++ ++ el
  ONIVA08G23410.1  45 RCAACRYLRRRCADDCVLAPFFPASRPHRYACVHRVFGASNVARLLQSLPMAERGNAANTMAMEAYWRVQDPVYGCTGIINRLQEEIRAVQCEL 138
                      6********************************************************************************************* PP

           DUF260  95 allkee 100
                      a+++++
  ONIVA08G23410.1 139 ARTQAH 144
                      *99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.19844145IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3745142IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MIDSAVSSPN PAKIFGDPAP KISRTMQDPE EDDDDQQQQH PAARRCAACR YLRRRCADDC  60
VLAPFFPASR PHRYACVHRV FGASNVARLL QSLPMAERGN AANTMAMEAY WRVQDPVYGC  120
TGIINRLQEE IRAVQCELAR TQAHLAIAVA SSQQPPPPPP PPPLPSPPPP QQQQQQQEEQ  180
SPPPLLDPAD EFLNLDGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-294613812104LOB family transfactor Ramosa2.1
5ly0_B3e-294613812104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126161e-175CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660281.14e-67PREDICTED: LOB domain-containing protein 24-like
SwissprotP594681e-38LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A0E0IEK31e-140A0A0E0IEK3_ORYNI; Uncharacterized protein
STRINGONIVA08G23410.11e-141(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.18e-32LOB domain-containing protein 24