PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G21050.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 367aa MW: 39632.5 Da PI: 4.5423 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.2 | 9e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nr+vtfskRrng++KKA+ELSvLCd++va+++fs++g+l +s ONIVA08G21050.2 9 KRIENTTNRHVTFSKRRNGLIKKAYELSVLCDIDVALLMFSPSGRLSHFS 58 79********************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.6E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.002 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-29 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.85E-36 | 2 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MGRVKLPIKR IENTTNRHVT FSKRRNGLIK KAYELSVLCD IDVALLMFSP SGRLSHFSGR 60 RGVEDVILRY MNLSEHDRGE AIQNREYLIS MLQRLKRESD MATQLANPGA LNEKIEEIQQ 120 EIYSSQQQLQ ITEDRLRMFE PDPAAFGTSS EVDGCEKYLM ELLTRVVERK NNLLSSHMAP 180 FDATTAAMQG ADGTQMYVSQ ADGLATFGGD AAMWGPDGGA DPGHPMFSAS DPLIYLRDHD 240 VYDANSQVAG LHGGDPCAAG GAAAAAAAVG CVDDDVAGGH AAAADAWRQA YTCTELLSTL 300 IPTTPFPLMP HCLGPEDQYL SMEHGMVAAA QEPVEASTAS CSYVPSDENS GTPVMAYESN 360 PPPANIA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-17 | 1 | 97 | 1 | 94 | MEF2 CHIMERA |
6byy_B | 6e-17 | 1 | 97 | 1 | 94 | MEF2 CHIMERA |
6byy_C | 6e-17 | 1 | 97 | 1 | 94 | MEF2 CHIMERA |
6byy_D | 6e-17 | 1 | 97 | 1 | 94 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FM956504 | 0.0 | FM956504.1 Oryza sativa Japonica Group mRNA for MADS62 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025883256.1 | 0.0 | agamous-like MADS-box protein AGL66 | ||||
TrEMBL | A0A0E0IDQ2 | 0.0 | A0A0E0IDQ2_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA08G21050.2 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4953 | 33 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 2e-65 | AGAMOUS-like 66 |