PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G20630.6
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 561aa    MW: 61145.6 Da    PI: 7.7234
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G20630.6genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011123145123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C+k+F  +s +  Hi +H
  ONIVA08G20630.6 123 FECPVCNKTFEEQSRYFGHIGSH 145
                      89*****************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.417497IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807697IPR007087Zinc finger, C2H2
SMARTSM003550.018123145IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.681123150IPR007087Zinc finger, C2H2
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MSLLGYPEFK TDNIEYGSTQ QHGLCADDGV NVLGVQHQIG TSMDSQSNLP VASATFYSHS  60
RDQDETVADD INSYECQQCN LTFHGQSAYA HHLITFHKVS SKRRKSNKVS KFGEPVIGKD  120
GKFECPVCNK TFEEQSRYFG HIGSHAKYQG LTPEAFLQTF SGKVGLSSSL QVLVGSPQLN  180
EKTTACEARS QHHDCSTKHG GNSTRGIDLF NSNHPANFNG HNQSWCRSDE IPPTTEAQST  240
WTYRNNEMNC ADRTVPRTVP QPNDHEDCRV SGFAEATNFN DQAGRHQGFR PFSFGTTNHC  300
QGQIIDHAVA ASKHAEVNNS MKSRDVNLNS RLNTISFPIA TANNETSTAL NDVNRSCITG  360
KGFSGSFSNN DGAASIVLPS SGLNNKISSS LGVADRSSIA ARSFNAGYVY ENGASEANNI  420
GNKNNTMVYQ TSLAMRPLSP EIAAGPAHVE ALFCLCRRGV VSGQETPLVR HSGSGGLAPS  480
GRPPANKAAA LLREGQPLWC PSGMEAKFHW ISLQDSCTLN VIQSKQSHVA KNAQPKQRWD  540
PHLASHFFIP TRAHLLQFEK Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682430.0AK068243.1 Oryza sativa Japonica Group cDNA clone:J013149G12, full insert sequence.
GenBankAP0043760.0AP004376.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0481F05.
GenBankAP0059180.0AP005918.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0419H09.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650335.10.0uncharacterized protein LOC4345879 isoform X1
RefseqXP_015650336.10.0uncharacterized protein LOC4345879 isoform X1
RefseqXP_015650337.10.0uncharacterized protein LOC4345879 isoform X1
RefseqXP_015650344.10.0uncharacterized protein LOC4345879 isoform X3
TrEMBLA0A0E0IDJ30.0A0A0E0IDJ3_ORYNI; Uncharacterized protein
STRINGOS08T0485600-010.0(Oryza sativa)