PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G20580.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 363aa    MW: 38083.6 Da    PI: 6.2897
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G20580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.79.9e-14138188154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++Y+k++
  ONIVA08G20580.1 138 QRMTHIAVERNRRKQMNEYLAVLRSLMPAS---YVQRGDQASIIGGAINYVKEM 188
                      79****************************...9*****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.11E-14136193No hitNo description
Gene3DG3DSA:4.10.280.103.2E-14136193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-17137205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-11138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10143194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MALEAVVFSE GYYFGCGGAM AAEAAAGGAW SWSHGYGGGV DQGKGVMELV VDDGVVNAFW  60
DGGGGGPSSS PVMAAVPGFI EEPDGGNSSV ADAAPPPEHG GASVVGRDGS AAAPAAAAGR  120
RKRRRARTVK NREEVESQRM THIAVERNRR KQMNEYLAVL RSLMPASYVQ RGDQASIIGG  180
AINYVKEMEQ LLQSLEAHRH ARRARTDAAA ALPFAGFFTF PQYSMSAVPT TTTTTVAAAA  240
TENGNAVAGA GAGDDADADV SGSKPSSVAD IEVTMVESHA NLKVLSRRRP RQLLRMVAGL  300
QHHRLAVLHL NVASAGHMAL YSLSLKVEED CQLTSVDDIA AAVHGIVETI EQEQQQQQKQ  360
SCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120124RKRRR
2138149RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076260.0AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649413.10.0transcription factor bHLH96
SwissprotQ9C7T43e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0E0IDI30.0A0A0E0IDI3_ORYNI; Uncharacterized protein
STRINGONIVA08G20580.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-66bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]