PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G20290.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 292aa    MW: 29913.4 Da    PI: 7.0575
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G20290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.52.8e-3263117459
      ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                      +rY+eClkNhA+ +GghavDGCgEfm++ geeg+++al+CaACgCHRnFHR+e+e+
  ONIVA08G20290.1  63 ARYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGSIDALRCAACGCHRNFHRKESES 117
                      79*************************9.999********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.7E-2963115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-2564117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.2E-3064114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.96365114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.2E-20218289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-32220290IPR009057Homeodomain-like
TIGRFAMsTIGR015657.0E-26228284IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDFDDHDEGD GDEEMPPMPL SSGYDAPMQP GLVGGGGGVP KPGGGVGGGG GGGGGGGGGG  60
GGARYRECLK NHAVGIGGHA VDGCGEFMAA GEEGSIDALR CAACGCHRNF HRKESESPTA  120
VGPAEPSAVS PAAISAYGAS PHHQFSPYYR TPAGYLHHQQ HQMAAAAAAA AAAAAGGYPQ  180
RPLALPSTSH SGRDEGDDMS GMVGPMVIGP MVGMSLGSAG PSGSGSGKKR FRTKFTQEQK  240
DKMLAFAERL GWRIQKHDEA AVQQFCEEVC VKRHVLKVWM HNNKHTLGKK AP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-292292861875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1095280.0AK109528.1 Oryza sativa Japonica Group cDNA clone:002-116-C04, full insert sequence.
GenBankAP0046430.0AP004643.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1113_A10.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695882.11e-171PREDICTED: zinc-finger homeodomain protein 2
SwissprotA2YWA61e-156ZHD2_ORYSI; Zinc-finger homeodomain protein 2
SwissprotQ6ZB901e-156ZHD2_ORYSJ; Zinc-finger homeodomain protein 2
TrEMBLA0A0E0IDF10.0A0A0E0IDF1_ORYNI; Uncharacterized protein
STRINGONIVA08G20290.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-59homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]