PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G19830.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 366aa MW: 37806.5 Da PI: 8.4296

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G19830.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.3	1.1e-15	291	334	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+k+ ONIVA08G19830.1 291 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNMELQKK 334 79***************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-12	287	353	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.944	289	334	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.06E-11	291	334	No hit	No description
CDD	cd14707	5.84E-24	291	337	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.4E-15	291	334	No hit	No description
Pfam	PF00170	7.1E-13	291	334	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	294	309	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MDLKDGGGSE RRGAAAGAGA GAAPLARQGS IYSLTFDEFQ STLGGMGGGL GKDFGSMNMD 60 ELLRSIWTAE ESQAMASASA SAAAAAAEGG LQRQGSLTLP RTLSVKTVDE VWRDFEREAS 120 PGAAAADGGG GGGGEQQQPR RQPTLGEMTL EEFLVRAGVV RENTAAAAAM VAAAAAPPVA 180 PRSIPAVNNS SIFFGNYGGV NDAAAAAAGA MGFSPVGIGD PTMGNGLMSG VAGIGGGAIT 240 VAPVDTSVGH MDSAGKGDGD LSSPMAPVPY PFEGVIRGRR SGGNVEKVVE RRQRRMIKNR 300 ESAARSRARK QAYTMELEAE VQKLKEQNME LQKKQVLEAV NNPYGQKKRC LRRTLTGPWN 360 VGEIHI

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MDLKDGGGSE RRGAAAGAGA GAAPLARQGS IYSLTFDEFQ STLGGMGGGL GKDFGSMNMD  60
ELLRSIWTAE ESQAMASASA SAAAAAAEGG LQRQGSLTLP RTLSVKTVDE VWRDFEREAS  120
PGAAAADGGG GGGGEQQQPR RQPTLGEMTL EEFLVRAGVV RENTAAAAAM VAAAAAPPVA  180
PRSIPAVNNS SIFFGNYGGV NDAAAAAAGA MGFSPVGIGD PTMGNGLMSG VAGIGGGAIT  240
VAPVDTSVGH MDSAGKGDGD LSSPMAPVPY PFEGVIRGRR SGGNVEKVVE RRQRRMIKNR  300
ESAARSRARK QAYTMELEAE VQKLKEQNME LQKKQVLEAV NNPYGQKKRC LRRTLTGPWN  360
VGEIHI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004457	0.0	AP004457.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0013B04.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650926.1	0.0	bZIP transcription factor TRAB1
Swissprot	Q6ZDF3	0.0	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	A0A0E0ID92	0.0	A0A0E0ID92_ORYNI; Uncharacterized protein
STRING	ONIVA08G19830.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	4e-36	bZIP family protein

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]