PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G19780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 381aa MW: 41474.9 Da PI: 9.9975 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.5 | 5.2e-34 | 27 | 124 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEES.SSS....SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.eng....nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k+y++++d+++++++sw ++g +sfvv+ + efa+++Lp+yFkhsnf+SFvRQLn+YgF+kv e+ weF+++ F+kg+ ONIVA08G19780.1 27 FLTKTYQLVDDPATDHVVSWGdDDGgesaSSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGE 111 9*******************9544478889****************************************999.........************ PP XXXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkkse 103 k+ll++i+r+ks+ ONIVA08G19780.1 112 KQLLCEIHRRKSA 124 **********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.4E-35 | 16 | 116 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.5E-55 | 23 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 9.52E-31 | 24 | 121 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.5E-29 | 27 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 71 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MEWEEESEAA RQKAAAAASA SVVPAPFLTK TYQLVDDPAT DHVVSWGDDD GGESASSFVV 60 WRPPEFARDI LPNYFKHSNF SSFVRQLNTY GFRKVVPERW EFANEFFRKG EKQLLCEIHR 120 RKSAAATWPP FPPPPPPFFA PRHFAAGAFF RHGDGMLHGR LGALVTTTER RHWFESAALP 180 VAPSSRLLSQ LGPVIAPARR AAATPEEEAL MQDNHRLLRG NAALVQELAH MRKLYSDIIY 240 FVQNHVRPVA PSPAAAAALH GLGVLRPPPA GGKAPASEVR GASGRSATSS SSFTVAEDQP 300 TLLALRLPRT TEKIINEVSG GNGGGRTKLF GVHLSSADEQ TSSGASRKRS PPQEQPPTSP 360 APKRTLVVEH SELRLSIVSP P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-22 | 16 | 121 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-22 | 16 | 121 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-22 | 16 | 121 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012616 | 0.0 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649314.1 | 0.0 | putative heat stress transcription factor B-4a | ||||
Swissprot | Q6Z9R8 | 0.0 | HFB4A_ORYSJ; Putative heat stress transcription factor B-4a | ||||
TrEMBL | A0A0E0ID86 | 0.0 | A0A0E0ID86_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA08G19780.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 4e-75 | heat shock transcription factor B4 |