PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G17500.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 400aa    MW: 41856.8 Da    PI: 9.3515
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G17500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-13330375655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  ONIVA08G17500.1 330 SIAERVRRTRISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKELQ 375
                      689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.243324374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-16327385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-12328379No hitNo description
Gene3DG3DSA:4.10.280.103.4E-15329387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-10330375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-13330380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MYGAPVSKDL SLQPAGVRTP PQMSSPGLLR YRSAPSTLLG EVCGDFVLPG GGGGGGQLQL  60
QQQRPGSPDH AADTVLARFL AGHGGHDNKP PRPAAHFAPP EDSMASHQQQ LMYQSHQQQQ  120
QMASAMEGLY RTVSSGGTES TAAAAGNSLL RQSSSPAGFL NHLTMDNGYG RNMLRAGMGG  180
GGGGGDPRLK GQLSFSSRQG SVMSQISEMG SEDEELAGGG GSPEAGSNGG GAARGGYGGG  240
YAMGSSAWEE PSPPATSLLP DSSLPSKRPR DDLPRQLSLP AASKSSSKPP SSASAAASPE  300
MAAIEKFLQF QDAVPCKIRA KRGCATHPRS IAERVRRTRI SERIRKLQEL VPNMEKQTNT  360
ADMLDLAVDY IKELQKQVKV LNDSRSSCTC SASKQKHFAG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8307420.0CT830742.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA047O11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612612.10.0transcription factor bHLH130
TrEMBLA0A0E0ICG20.0A0A0E0ICG2_ORYNI; Uncharacterized protein
TrEMBLA2Z2K20.0A2Z2K2_ORYSI; Uncharacterized protein
STRINGONIVA08G17500.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.19e-39bHLH family protein