PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G16750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 352aa MW: 36589 Da PI: 6.2758 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.8 | 1.1e-14 | 130 | 176 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L +++e++k+L ONIVA08G16750.1 130 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 176 78*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.066 | 127 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.21E-14 | 130 | 179 | No hit | No description |
Pfam | PF00010 | 4.1E-12 | 130 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.3E-15 | 131 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-15 | 131 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.4E-14 | 133 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 9.9E-4 | 225 | 276 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MWEAVGGGDG TALLPWPGSA AAATTSGAAA PLYMPPAAAA AAPFAAGEQL PVEQPFYFDG 60 GGGVAGHNHH PHHHQYGMEA PPPLTMMQMG GGGSSSSRMV VSGLLGTLQA ELGRMTAKEI 120 MDAKALAASR SHSEAERRRR QRINGHLARL RSLLPNTTKT DKASLLAEVI EHVKELKRQT 180 SAMMEDGAAG GEAAAAPVVL LPTEDDELEV DAAADEGGRL VARASLCCED RADLIPGIAR 240 ALAALRLRAR RAEIATLGGR VRSVLLIAAV EEEDPDEAGN DDDGEHGYGV AASHRRHELV 300 ASIHEALRGV MNRKAASSDT SSSGAGGGGG SIKRQRMISA HDQQGSFNSS GW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109616 | 0.0 | AK109616.1 Oryza sativa Japonica Group cDNA clone:002-137-H01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648851.1 | 0.0 | transcription factor bHLH30 | ||||
TrEMBL | A0A0E0IC78 | 0.0 | A0A0E0IC78_ORYNI; Uncharacterized protein | ||||
TrEMBL | B8BB09 | 0.0 | B8BB09_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA08G16750.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1918 | 38 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 9e-39 | bHLH family protein |