PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G16720.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 266aa    MW: 27824.5 Da    PI: 5.652
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G16720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.84e-34872073124
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksa 94 
                       ++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+s t+eWLl+q+k+ai  lt  +s +a ++            ++++++a+++a
  ONIVA08G16720.1  87 FRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAINRLTLPDSADAAAApaF---AAAPPPADQHSSAMAAA 177
                      689**********************************************************9955555333211...11112222233344444 PP

              TCP  95 akskksqksaasalnlakesrakararare 124
                      a    ++k +as ++  + s+a+ar r ++
  ONIVA08G16720.1 178 AALAAKEKGEASSSSTTNASSARARNRDHD 207
                      455666666665677777777777777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR015117.7E-54757IPR020467Potassium channel, voltage dependent, Kv1.4
PRINTSPR015117.7E-56069IPR020467Potassium channel, voltage dependent, Kv1.4
PROSITE profilePS5136933.08788146IPR017887Transcription factor TCP subgroup
PfamPF036341.8E-3288203IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSAPSSSSSP STLDEYDARF FFPGADAYTA GHRQDEETLE AVLRQPVTTT AAVAAAAAAV  60
EGGGGGGGGG AGGSPAAAAA ATRRRPFRTD RHSKIRTAQG VRDRRMRLSV GVARDFFALQ  120
DKLGFDKASR TVEWLLTQSK HAINRLTLPD SADAAAAPAF AAAPPPADQH SSAMAAAAAL  180
AAKEKGEASS SSTTNASSAR ARNRDHDGSS PVAPMDERGR RGVELDWTAA AAASTEQPMD  240
GLEYYFQYYN HLEEIMSCDP TTTTDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883271.11e-123transcription factor TB1
TrEMBLA0A0E0IC750.0A0A0E0IC75_ORYNI; Uncharacterized protein
STRINGONIVA08G16720.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.25e-24TCP family protein