PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G13790.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 296aa    MW: 33684.8 Da    PI: 5.3059
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G13790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB71.71.3e-221195387
            NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87
                     ++d  lP + + +i+k++lP + ++++da++++ ec +efi +++se+++ c re++kti+++ +l al +lGf +y+e++++  
  ONIVA08G13790.1 11 KEDVSLPKSTMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREDKKTIAPEHVLRALQDLGFREYIEEVQAAY 95
                     67999**************************************************************************998654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.3E-388140IPR009072Histone-fold
SuperFamilySSF471131.57E-3312140IPR009072Histone-fold
PfamPF008082.6E-191579IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDPMDIVGKS KEDVSLPKST MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE  60
VCSREDKKTI APEHVLRALQ DLGFREYIEE VQAAYEHHKH DTLDSPKASK FTGVEMTEEQ  120
AVAEQQRMFA EARARMNNGA AKPKEPEPEA QQQTQQPPQP QLHPQPQQPL QPQLQLHPQP  180
QQQPSQLHPQ QLLHPQSQQT PQPQPQVHPQ PQQPPQLQPQ PQLLQQPQLP QQLQPQSQLP  240
PQPQQPPQLQ LQSQLHPQPQ QPPQLQPQPQ LHQQPQPQAE LQSQSQPQTE HGLDSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-321213312133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4649020.0AF464902.1 Oryza sativa repressor protein (Dr1) mRNA, complete cds.
GenBankCT8301300.0CT830130.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA058B22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650908.10.0protein Dr1 homolog isoform X2
SwissprotP495922e-80NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A0E0AIJ20.0A0A0E0AIJ2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0IB740.0A0A0E0IB74_ORYNI; Uncharacterized protein
TrEMBLQ0J6030.0Q0J603_ORYSJ; Os08g0383700 protein
TrEMBLQ8W0W90.0Q8W0W9_ORYSA; Repressor protein
STRINGOGLUM07G10490.10.0(Oryza glumipatula)
STRINGONIVA08G13790.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57203549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.42e-80nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]