PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA08G12870.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 354aa    MW: 38641.6 Da    PI: 4.584
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA08G12870.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.56.5e-316110196
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..........peeeredamsslvyeAearardPvyGavgvilklq 84 
                      +Ca+Ck+lrr+C+kdC++ap fpa++p+kfa+vhk+FGa nv+k+l+ +          p +++ da+sslvyeA+ r+rdPvyG+ + +++lq
  ONIVA08G12870.3   6 PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGAINVSKMLQYIksdfflpnelPAQQQGDAVSSLVYEANDRIRDPVYGCNQ-VSQLQ 98 
                      7*********************************************976555555555588899**********************76.67899 PP

           DUF260  85 qqleqlkaelal 96 
                       ql+ ++ e+  
  ONIVA08G12870.3  99 MQLAVAQGEILC 110
                      999988887755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.9395115IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-316108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGSGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGAINVSKM LQYIKSDFFL  60
PNELPAQQQG DAVSSLVYEA NDRIRDPVYG CNQVSQLQMQ LAVAQGEILC SQMQHCDGNE  120
NEENVVPRRR QVLLPAQLVS PYGVDTVCRR REPGTTQRKI LGYATGCHLP SPLVPRSAGP  180
CSGFPSIVGS EGVLREGGAG MGEEEDPDWL RAFQPPTTSM ALIECDGDSI DLSGDVGAVG  240
RIVISNSPNG NQDLLLDLKG TIYKSTIVPS RTFCVIESIM NDFIQLEPQS NLFEAETMVE  300
GTLDGFTFDS DEEGDKLPEP HASQNDQNNE DGDQPKAKTK RKAEKPAVCS LLPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3321097112LOB family transfactor Ramosa2.1
5ly0_B2e-3321097112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680651e-100AK068065.1 Oryza sativa Japonica Group cDNA clone:J013131D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0IAU70.0A0A0E0IAU7_ORYNI; Uncharacterized protein
STRINGONIVA08G12870.11e-153(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.16e-53LBD family protein