PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G12870.2

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 455aa MW: 49457.6 Da PI: 6.0763

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G12870.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.4	6.3e-30	6	93	1	78
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..........peeeredamsslvyeAearardPvyGavg 78 +Ca+Ck+lrr+C+kdC++ap fpa++p+kfa+vhk+FGa nv+k+l+ + p +++ da+sslvyeA+ r+rdPvyG+vg ONIVA08G12870.2 6 PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGAINVSKMLQYIksdfflpnelPAQQQGDAVSSLVYEANDRIRDPVYGCVG 93 7*******************************************976555555555588899********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.646	5	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-30	6	93	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MGSGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGAINVSKM LQYIKSDFFL 60 PNELPAQQQG DAVSSLVYEA NDRIRDPVYG CVGPGPSPSC RTRCHSCRCS SPSHRARSSA 120 ARCSTAMATR TRRMTTQRKI LGYATGCHLP SPLVPRSAGP CSGFPSIVGS EGVLREGGAG 180 MGEEEDPDWL RAFQPPTTSM VMLSSDSYDS PENSPTRTTP SGEEQKGENK ANAFGKDEKP 240 TMESNQDKPA KRSTPKKLVK FPSSSNASKV TGPKAGPDQI DDTLEHREEG VAEVDMQDKL 300 TEHSVSQRLP LIIPDKVHRS KALIECDGDS IDLSGDVGAV GRIVISNSPN GNQDLLLDLK 360 GTIYKSTIVP SRTFCVIESI MNDFIQLEPQ SNLFEAETMV EGTLDGFTFD SDEEGDKLPE 420 PHASQNDQNN EDGDQPKAKT KRKAEKPAVC SLLPF

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MGSGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGAINVSKM LQYIKSDFFL  60
PNELPAQQQG DAVSSLVYEA NDRIRDPVYG CVGPGPSPSC RTRCHSCRCS SPSHRARSSA  120
ARCSTAMATR TRRMTTQRKI LGYATGCHLP SPLVPRSAGP CSGFPSIVGS EGVLREGGAG  180
MGEEEDPDWL RAFQPPTTSM VMLSSDSYDS PENSPTRTTP SGEEQKGENK ANAFGKDEKP  240
TMESNQDKPA KRSTPKKLVK FPSSSNASKV TGPKAGPDQI DDTLEHREEG VAEVDMQDKL  300
TEHSVSQRLP LIIPDKVHRS KALIECDGDS IDLSGDVGAV GRIVISNSPN GNQDLLLDLK  360
GTIYKSTIVP SRTFCVIESI MNDFIQLEPQ SNLFEAETMV EGTLDGFTFD SDEEGDKLPE  420
PHASQNDQNN EDGDQPKAKT KRKAEKPAVC SLLPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-30	2	93	7	88	LOB family transfactor Ramosa2.1
5ly0_B	7e-30	2	93	7	88	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK059340	0.0	AK059340.1 Oryza sativa Japonica Group cDNA clone:001-026-B04, full insert sequence.
GenBank	AK243199	0.0	AK243199.1 Oryza sativa Japonica Group cDNA, clone: J100040F14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025878966.1	1e-169	DNA-binding protein BIN4 isoform X4
TrEMBL	A0A0E0IAU6	0.0	A0A0E0IAU6_ORYNI; Uncharacterized protein
STRING	ONIVA08G12870.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	7e-42	LBD family protein