PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA08G12870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 475aa MW: 51926.3 Da PI: 4.8247 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.2 | 8.2e-31 | 6 | 110 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..........peeeredamsslvyeAearardPvyGavgvilklq 84 +Ca+Ck+lrr+C+kdC++ap fpa++p+kfa+vhk+FGa nv+k+l+ + p +++ da+sslvyeA+ r+rdPvyG+ + +++lq ONIVA08G12870.1 6 PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGAINVSKMLQYIksdfflpnelPAQQQGDAVSSLVYEANDRIRDPVYGCNQ-VSQLQ 98 7*********************************************976555555555588899**********************76.67899 PP DUF260 85 qqleqlkaelal 96 ql+ ++ e+ ONIVA08G12870.1 99 MQLAVAQGEILC 110 999988887755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.939 | 5 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.2E-31 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MGSGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGAINVSKM LQYIKSDFFL 60 PNELPAQQQG DAVSSLVYEA NDRIRDPVYG CNQVSQLQMQ LAVAQGEILC SQMQHCDGNE 120 NEENVVPRRR QVLLPAQLVS PYGVDTVCRR REPGTTQRKI LGYATGCHLP SPLVPRSAGP 180 CSGFPSIVGS EGVLREGGAG MGEEEDPDWL RAFQPPTTSM VMLSSDSYDS PENSPTRTTP 240 SGEEQKGENK ANAFGKDEKP TMESNQDKPA KRSTPKKLVK FPSSSNASKV TGPKAGPDQI 300 DDTLEHREEG VAEVDMQDKL TEHSVSQRLP LIIPDKVHRS KALIECDGDS IDLSGDVGAV 360 GRIVISNSPN GNQDLLLDLK GTIYKSTIVP SRTFCVIESI MNDFIQLEPQ SNLFEAETMV 420 EGTLDGFTFD SDEEGDKLPE PHASQNDQNN EDGDQPKAKT KRKAEKPAVC SLLPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-31 | 2 | 109 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-31 | 2 | 109 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK059340 | 0.0 | AK059340.1 Oryza sativa Japonica Group cDNA clone:001-026-B04, full insert sequence. | |||
GenBank | AK243199 | 0.0 | AK243199.1 Oryza sativa Japonica Group cDNA, clone: J100040F14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878966.1 | 1e-168 | DNA-binding protein BIN4 isoform X4 | ||||
TrEMBL | A0A0E0IAU5 | 0.0 | A0A0E0IAU5_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA08G12870.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6389 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 3e-52 | LBD family protein |